This subproject is one of many research subprojects utilizing the resources provided by a Center grant funded by NIH/NCRR. The subproject and investigator (PI) may have received primary funding from another NIH source, and thus could be represented in other CRISP entries. The institution listed is for the Center, which is not necessarily the institution for the investigator. Transition metal dioxygen complexes are important in several fields of biology and chemistry, which include aerobic oxidation, oxidative catalysis, and biological O2 activation. However, very few reports of Ni-O2 complexes are available, partly due to the difficulty in the isolation of NiI complexes, which have the target Ni oxidation state for O2 reactivity. Recently, we synthesized and spectroscopically characterized a Ni-O2 complex (1) ([Ni(14-tmc)O2](OTf);(14-tmc)=1,4,8,11-tetramethyl-1,4,8,11-tetraazacyclotetradecane;(OTf)=CF3SO3), with an O-O stretching frequency of 1131 cm-1. Ni K-edge XAS and EXAFS data were combined with optical spectroscopies to arrive at a NiII-superoxide description of 1. In the lack of a crystal structure, EXAFS and DFT calculations were used to predict that O2 binds in an end-on fashion. Experiments with modified axial ligand systems have led to surprising results. For example, the choice of 13-tmc (1,4,7,10-tetramethyl-1,4,7,10-tetraazacyclotridecane) as a ligand results in a species (2) with similar spectroscopic features as 1, while 12-tmc (1,4,7,10-tetramethyl-1,4,7,10-tetraazacyclododecane) results in a species (3). 3 has been crystallographically characterized and has a unique side-on bound Ni-O2 conformation. 3 also demonstrates starkly different spectroscopic properties with a decreased O-O stretching frequency (1002 cm-1). The decrease in O-O frequency indicates a more peroxide like character in 3, which would suggest a NiIII-like character in 3 compared to a NiII-like character in 1. It is likely that the change in the axial ligand in 1 (14-tmc) to 12-tmc (3) tunes the bonding between the central Ni atom and dioxygen. To understand the role of the different tmc ligands in Ni-O2 bonding, we propose to undertake Ni K-edge XAS experiments on 1(for comparison purposes), 2 and 3.

Agency
National Institute of Health (NIH)
Institute
National Center for Research Resources (NCRR)
Type
Biotechnology Resource Grants (P41)
Project #
2P41RR001209-31
Application #
8170143
Study Section
Special Emphasis Panel (ZRG1-BCMB-P (40))
Project Start
2010-05-01
Project End
2011-02-28
Budget Start
2010-05-01
Budget End
2011-02-28
Support Year
31
Fiscal Year
2010
Total Cost
$346
Indirect Cost
Name
Stanford University
Department
Chemistry
Type
Schools of Arts and Sciences
DUNS #
009214214
City
Stanford
State
CA
Country
United States
Zip Code
94305
Aleman, Fernando; Tzarum, Netanel; Kong, Leopold et al. (2018) Immunogenetic and structural analysis of a class of HCV broadly neutralizing antibodies and their precursors. Proc Natl Acad Sci U S A 115:7569-7574
Herrera, Nadia; Maksaev, Grigory; Haswell, Elizabeth S et al. (2018) Elucidating a role for the cytoplasmic domain in the Mycobacterium tuberculosis mechanosensitive channel of large conductance. Sci Rep 8:14566
Lal, Neeraj K; Nagalakshmi, Ugrappa; Hurlburt, Nicholas K et al. (2018) The Receptor-like Cytoplasmic Kinase BIK1 Localizes to the Nucleus and Regulates Defense Hormone Expression during Plant Innate Immunity. Cell Host Microbe 23:485-497.e5
Pluvinage, Benjamin; Grondin, Julie M; Amundsen, Carolyn et al. (2018) Molecular basis of an agarose metabolic pathway acquired by a human intestinal symbiont. Nat Commun 9:1043
Beyerlein, Kenneth R; Jönsson, H Olof; Alonso-Mori, Roberto et al. (2018) Ultrafast nonthermal heating of water initiated by an X-ray Free-Electron Laser. Proc Natl Acad Sci U S A 115:5652-5657
Yoshizawa, Takuya; Ali, Rustam; Jiou, Jenny et al. (2018) Nuclear Import Receptor Inhibits Phase Separation of FUS through Binding to Multiple Sites. Cell 173:693-705.e22
Vickers, Chelsea; Liu, Feng; Abe, Kento et al. (2018) Endo-fucoidan hydrolases from glycoside hydrolase family 107 (GH107) display structural and mechanistic similarities to ?-l-fucosidases from GH29. J Biol Chem 293:18296-18308
Nguyen, Phong T; Lai, Jeffrey Y; Lee, Allen T et al. (2018) Noncanonical role for the binding protein in substrate uptake by the MetNI methionine ATP Binding Cassette (ABC) transporter. Proc Natl Acad Sci U S A 115:E10596-E10604
Dods, Robert; Båth, Petra; Arnlund, David et al. (2017) From Macrocrystals to Microcrystals: A Strategy for Membrane Protein Serial Crystallography. Structure 25:1461-1468.e2
de Vries, Robert P; Tzarum, Netanel; Peng, Wenjie et al. (2017) A single mutation in Taiwanese H6N1 influenza hemagglutinin switches binding to human-type receptors. EMBO Mol Med 9:1314-1325

Showing the most recent 10 out of 604 publications