The metal-ligand stretching frequencies in metalloproteins fall in the far-infrared region. The iron atom in the hemeprotein, myoglobin, binds four nitrogen ligands from the heme group, one nitrogen ligand from a histidine residue in the protein, and the sixth coordination position is the oxygen-binding site. Since other ligands such as carbon monoxide and nitric oxide also competitively bind to the oxygen-binding site, it is important to characterize the structural and electronic intermediates that are involved in the ligand-binding process. Since the iron-ligand bond can be photolyzed at 10 K, we are Hable to use photolyzed/unphotolyzed difference FTIR to probe vibrational modes such as (1) the iron-ligand stretching frequency, (2) the iron-proximal histidine stretching frequency, and (3) heme doming modes, all of which differ in the ligand-bound and photolyzed states. Resonance Raman studies have also been used to identify some of these modes. However, the conditions by which several of them are resonance-enhanced are still unclear, making infrared spectroscopy a necessary alternative. In the past, we have been unsuccessful with myoglobin films in polyvinyl alcohol (PVA) on polyethylene due to (1) the temperature-dependence of the far infrared spectrum of PVA and (2) Hthe optically-opaque nature of polyethylene, making it difficult to Hphotolyze myoglobin at low temperature. Recently, we have shown that Hsolution samples in 75:25 glycerol:water (50 ?m pathlength) between Hsapphire windows are reasonably transparent in the far infrared region Hbelow 100 K and completely transparent in the visible. These findings Hwill greatly improve the ability to (1) photolyze the sample, (2) Hcollect high quality difference spectra, and (3) collect far-infrared Hprotein spectra in solution?a more biologically relevant state of the protein.

Agency
National Institute of Health (NIH)
Institute
National Center for Research Resources (NCRR)
Type
Biotechnology Resource Grants (P41)
Project #
5P41RR001633-17
Application #
6205746
Study Section
Project Start
1999-09-01
Project End
2000-08-31
Budget Start
1998-10-01
Budget End
1999-09-30
Support Year
17
Fiscal Year
1999
Total Cost
Indirect Cost
Name
Albert Einstein College of Medicine
Department
Type
DUNS #
009095365
City
Bronx
State
NY
Country
United States
Zip Code
10461
Vongsvivut, Jitraporn; Fernandez, Jason; Ekgasit, Sanong et al. (2004) Characterization of supported cylinder-planar germanium waveguide sensors with synchrotron infrared radiation. Appl Spectrosc 58:143-51
Masip, Lluis; Pan, Jonathan L; Haldar, Suranjana et al. (2004) An engineered pathway for the formation of protein disulfide bonds. Science 303:1185-9
Huang, Raymond Y; Miller, Lisa M; Carlson, Cathy S et al. (2003) In situ chemistry of osteoporosis revealed by synchrotron infrared microspectroscopy. Bone 33:514-21
Rashidzadeh, Hassan; Khrapunov, Sergei; Chance, Mark R et al. (2003) Solution structure and interdomain interactions of the Saccharomyces cerevisiae ""TATA binding protein"" (TBP) probed by radiolytic protein footprinting. Biochemistry 42:3655-65
Uchida, Takeshi; Takamoto, Keiji; He, Qin et al. (2003) Multiple monovalent ion-dependent pathways for the folding of the L-21 Tetrahymena thermophila ribozyme. J Mol Biol 328:463-78
Taylor, Colleen M; Watton, Stephen P; Bryngelson, Peter A et al. (2003) Inner-sphere complexation of cobalt(II) 2,9-dimethyl-1,10-phenanthroline ([Co(neo)]2+) with commercial and sol-gel derived silica gel surfaces. Inorg Chem 42:312-20
Dhavan, Gauri M; Crothers, Donald M; Chance, Mark R et al. (2002) Concerted binding and bending of DNA by Escherichia coli integration host factor. J Mol Biol 315:1027-37
Uchida, Takeshi; He, Qin; Ralston, Corie Y et al. (2002) Linkage of monovalent and divalent ion binding in the folding of the P4-P6 domain of the Tetrahymena ribozyme. Biochemistry 41:5799-806
Tang, Qun; Carrington, Paul E; Horng, Yih-Chern et al. (2002) X-ray absorption and resonance Raman studies of methyl-coenzyme M reductase indicating that ligand exchange and macrocycle reduction accompany reductive activation. J Am Chem Soc 124:13242-56
Guan, Jing-Qu; Vorobiev, Sergeui; Almo, Steven C et al. (2002) Mapping the G-actin binding surface of cofilin using synchrotron protein footprinting. Biochemistry 41:5765-75

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