ydrogen-bonding interactions are crucial to the stabilization of the DNA double helix. Adenine is hydrogen bonded to thymine via two hydrogen bonds, whereas guanine and cytosine are hydrogen bonded through three hydrogen bonds. Thus, poly-nucleic acids containing adenine-thymine pairs are expected to have different hydrogen bonding interactions than poly-nucleic acids containing guanine-cytosine pairs. The vibrational modes associated with hydrogen bonds fall in the far-infrared region (150-250 cm-1). Thus, a comparison of the far infrared spectra of poly-dAdT versus poly-dGdC provides a method for studying hydrogen-bonding interactions in DNA. We have grown films of Hpoly-(dAdT), poly-(dA) poly-(dT), poly-(dGdC), and poly-(dG) poly-(dC) Hon polyethylene disks and determined their far infrared spectra from H10 - 295 K. In poly-(dAdT), we observe a single, intense band at 168 Hcm-1, which shifts to 178 cm-1 at cryogenic temperatures (40 K). In Hpoly-(dGdC), we observe two intense bands in the far infrared at room Htemperature: 96 and 162 cm-1. The intensity of the 96 cm-1 mode Hdecreases dramatically at 10 K and the peak at 162 cm-1 shifts to 166 Hcm-1 at 10 K. We plan to continue our studies on poly-nucleic acids by Hgrowing films under different conditions, such as in the presence of HD2O and varying humidity conditions. D2O is expected to shift the Hfrequency of hydrogen-bonding interactions and humidity variations Hmake it possible to generate different helical conditions such as B-Hversus A-DNA.

Agency
National Institute of Health (NIH)
Institute
National Center for Research Resources (NCRR)
Type
Biotechnology Resource Grants (P41)
Project #
5P41RR001633-19
Application #
6491457
Study Section
Project Start
2001-09-01
Project End
2002-08-31
Budget Start
Budget End
Support Year
19
Fiscal Year
2001
Total Cost
Indirect Cost
Name
Albert Einstein College of Medicine
Department
Type
DUNS #
009095365
City
Bronx
State
NY
Country
United States
Zip Code
10461
Vongsvivut, Jitraporn; Fernandez, Jason; Ekgasit, Sanong et al. (2004) Characterization of supported cylinder-planar germanium waveguide sensors with synchrotron infrared radiation. Appl Spectrosc 58:143-51
Masip, Lluis; Pan, Jonathan L; Haldar, Suranjana et al. (2004) An engineered pathway for the formation of protein disulfide bonds. Science 303:1185-9
Huang, Raymond Y; Miller, Lisa M; Carlson, Cathy S et al. (2003) In situ chemistry of osteoporosis revealed by synchrotron infrared microspectroscopy. Bone 33:514-21
Rashidzadeh, Hassan; Khrapunov, Sergei; Chance, Mark R et al. (2003) Solution structure and interdomain interactions of the Saccharomyces cerevisiae ""TATA binding protein"" (TBP) probed by radiolytic protein footprinting. Biochemistry 42:3655-65
Uchida, Takeshi; Takamoto, Keiji; He, Qin et al. (2003) Multiple monovalent ion-dependent pathways for the folding of the L-21 Tetrahymena thermophila ribozyme. J Mol Biol 328:463-78
Taylor, Colleen M; Watton, Stephen P; Bryngelson, Peter A et al. (2003) Inner-sphere complexation of cobalt(II) 2,9-dimethyl-1,10-phenanthroline ([Co(neo)]2+) with commercial and sol-gel derived silica gel surfaces. Inorg Chem 42:312-20
Dewan, John C; Feeling-Taylor, Angela; Puius, Yoram A et al. (2002) Structure of mutant human carbonmonoxyhemoglobin C (betaE6K) at 2.0 A resolution. Acta Crystallogr D Biol Crystallogr 58:2038-42
Kiselar, J G; Maleknia, S D; Sullivan, M et al. (2002) Hydroxyl radical probe of protein surfaces using synchrotron X-ray radiolysis and mass spectrometry. Int J Radiat Biol 78:101-14
Swisher, Jennifer F; Su, Linhui J; Brenowitz, Michael et al. (2002) Productive folding to the native state by a group II intron ribozyme. J Mol Biol 315:297-310
Dhavan, Gauri M; Crothers, Donald M; Chance, Mark R et al. (2002) Concerted binding and bending of DNA by Escherichia coli integration host factor. J Mol Biol 315:1027-37

Showing the most recent 10 out of 68 publications