We have now been able to freeze all the virus crystals mentioned below. Thus, nearly all our data this year were of frozen crystals. This created vast new possibilities. In the past, we have had to use one new crystal every two to six exposures (depending on the crystals). Now we can collect a whole data set (often almost 500 exposures) with a single crystal. That makes possible a vast new array of experiments with mutants and ligands that were not readily possible previously. (a) Parvoviruses The following conditions were explored for feline and canine parvoviruses. (i) pH changes from 5.5 to 7.2. This alters the ability to hemagglutinate, in other words, alters the ability of the virus to bind to specific receptors in the Rhesus monkey erythrocytes. (ii) The effect of Ca2+ ions. These ions are associated with changes of conformation of the hemagglutinating loop on the viral surface. (iii) Soaking and co-crystallization with various sialic acids, which are the terminal carbohydrate residues used by the virus in binding host cells. We have also obtained some initial diffraction patterns of porcine parvovirus capsids assembled in a baculovirus expression system. (b) Picornaviruses We have collected complete data sets of some antiviral compounds bound to human rhinovirus 16 (HRV16). We have collected complete data sets of some drug-dependent HRV16 mutants. These viruses are unstable in the absence of drug. We collected some MAD data on ICAM-1, the receptor to the major group of rhinoviruses. We solved this structure and have fitted the structure into cryo-EM reconstructions of the complex of ICAM-1 with HRV16. This is the first atomic resolution study of a proteinaceous receptor interaction with a virus. We obtained some initial results on crystals of encephalomyocarditis virus. (c) Microviridae We have collected a partial, relatively low resolution data set of a3, an E. coli bacteriophage homologous to fX174. (d) Other Results We collected data on crystals of a mutant of the """"""""whisker"""""""" protein of phage T4 (this was """"""""warm"""""""" data). We obtained initial results of crystals of the prolate head of phage f2?

Agency
National Institute of Health (NIH)
Institute
National Center for Research Resources (NCRR)
Type
Biotechnology Resource Grants (P41)
Project #
2P41RR001646-16
Application #
6281303
Study Section
Project Start
1998-09-15
Project End
1999-08-14
Budget Start
1997-10-01
Budget End
1998-09-30
Support Year
16
Fiscal Year
1998
Total Cost
Indirect Cost
Name
Cornell University
Department
Type
DUNS #
City
Ithaca
State
NY
Country
United States
Zip Code
14850
Kozlov, Guennadi; Wong, Kathy; Gehring, Kalle (2018) Crystal structure of the Legionella effector Lem22. Proteins 86:263-267
Ménade, Marie; Kozlov, Guennadi; Trempe, Jean-François et al. (2018) Structures of ubiquitin-like (Ubl) and Hsp90-like domains of sacsin provide insight into pathological mutations. J Biol Chem 293:12832-12842
Xu, Jie; Kozlov, Guennadi; McPherson, Peter S et al. (2018) A PH-like domain of the Rab12 guanine nucleotide exchange factor DENND3 binds actin and is required for autophagy. J Biol Chem 293:4566-4574
Dean, Dexter N; Rana, Pratip; Campbell, Ryan P et al. (2018) Propagation of an A? Dodecamer Strain Involves a Three-Step Mechanism and a Key Intermediate. Biophys J 114:539-549
Chen, Yu Seby; Kozlov, Guennadi; Fakih, Rayan et al. (2018) The cyclic nucleotide-binding homology domain of the integral membrane protein CNNM mediates dimerization and is required for Mg2+ efflux activity. J Biol Chem 293:19998-20007
Xu, Caishuang; Kozlov, Guennadi; Wong, Kathy et al. (2016) Crystal Structure of the Salmonella Typhimurium Effector GtgE. PLoS One 11:e0166643
Cogliati, Massimo; Zani, Alberto; Rickerts, Volker et al. (2016) Multilocus sequence typing analysis reveals that Cryptococcus neoformans var. neoformans is a recombinant population. Fungal Genet Biol 87:22-9
Oot, Rebecca A; Kane, Patricia M; Berry, Edward A et al. (2016) Crystal structure of yeast V1-ATPase in the autoinhibited state. EMBO J 35:1694-706
Lucido, Michael J; Orlando, Benjamin J; Vecchio, Alex J et al. (2016) Crystal Structure of Aspirin-Acetylated Human Cyclooxygenase-2: Insight into the Formation of Products with Reversed Stereochemistry. Biochemistry 55:1226-38
Bauman, Joseph D; Harrison, Jerry Joe E K; Arnold, Eddy (2016) Rapid experimental SAD phasing and hot-spot identification with halogenated fragments. IUCrJ 3:51-60

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