This subproject is one of many research subprojects utilizing theresources provided by a Center grant funded by NIH/NCRR. The subproject andinvestigator (PI) may have received primary funding from another NIH source,and thus could be represented in other CRISP entries. The institution listed isfor the Center, which is not necessarily the institution for the investigator.The primary purpose of these experiments is to study aspects of the high pressure cryocooling process in preparation for cryocooling 70S ribosome crystals. This involves basic studies of the formation of high density amorphous(HDA) ice in crystals (Gruner group task) by application to model protein crystals, and data collection on pressure frozen 70S ribosome crystals provided by the Noller group. High pressure cryocooling will be applied in three different directions. In all cases, these experiments cannot be performed at rotating anode sources. 1. Mechanism study involving HDA ice. The mechanism of high pressure cryocooling was proposed involving high density amorphous (HDA) ice, which has 1.17 g/cm3 at 1 bar and 77 K. We would like to prove that HDA ice does form by high pressure cryocooling and affect crystal diffraction. We plan to collect solution/crystal diffraction images by increasing temperature gradually. 2. The structural changes induced by pressure are usually very small but sometimes not negligible. We recently observed that elastase showed a significant crystal unit cell change (a= 50 A --> a= 46.5 A) when pressure frozen and the structure was quite different than the ambient pressure one. More interestingly, the changed one is very similar to the structure induced by chemical perturbation. We plan to study elastase as a model system to understand pressure effects on proteins. 3. 70S ribosome crystals will be pressure frozen using various protocols and examined.

Agency
National Institute of Health (NIH)
Institute
National Center for Research Resources (NCRR)
Type
Biotechnology Resource Grants (P41)
Project #
2P41RR001646-26
Application #
7721303
Study Section
Special Emphasis Panel (ZRG1-BCMB-E (40))
Project Start
2008-08-01
Project End
2009-06-30
Budget Start
2008-08-01
Budget End
2009-06-30
Support Year
26
Fiscal Year
2008
Total Cost
$33,309
Indirect Cost
Name
Cornell University
Department
Chemistry
Type
Schools of Arts and Sciences
DUNS #
872612445
City
Ithaca
State
NY
Country
United States
Zip Code
14850
Kozlov, Guennadi; Wong, Kathy; Gehring, Kalle (2018) Crystal structure of the Legionella effector Lem22. Proteins 86:263-267
Ménade, Marie; Kozlov, Guennadi; Trempe, Jean-François et al. (2018) Structures of ubiquitin-like (Ubl) and Hsp90-like domains of sacsin provide insight into pathological mutations. J Biol Chem 293:12832-12842
Xu, Jie; Kozlov, Guennadi; McPherson, Peter S et al. (2018) A PH-like domain of the Rab12 guanine nucleotide exchange factor DENND3 binds actin and is required for autophagy. J Biol Chem 293:4566-4574
Dean, Dexter N; Rana, Pratip; Campbell, Ryan P et al. (2018) Propagation of an A? Dodecamer Strain Involves a Three-Step Mechanism and a Key Intermediate. Biophys J 114:539-549
Chen, Yu Seby; Kozlov, Guennadi; Fakih, Rayan et al. (2018) The cyclic nucleotide-binding homology domain of the integral membrane protein CNNM mediates dimerization and is required for Mg2+ efflux activity. J Biol Chem 293:19998-20007
Xu, Caishuang; Kozlov, Guennadi; Wong, Kathy et al. (2016) Crystal Structure of the Salmonella Typhimurium Effector GtgE. PLoS One 11:e0166643
Cogliati, Massimo; Zani, Alberto; Rickerts, Volker et al. (2016) Multilocus sequence typing analysis reveals that Cryptococcus neoformans var. neoformans is a recombinant population. Fungal Genet Biol 87:22-9
Oot, Rebecca A; Kane, Patricia M; Berry, Edward A et al. (2016) Crystal structure of yeast V1-ATPase in the autoinhibited state. EMBO J 35:1694-706
Lucido, Michael J; Orlando, Benjamin J; Vecchio, Alex J et al. (2016) Crystal Structure of Aspirin-Acetylated Human Cyclooxygenase-2: Insight into the Formation of Products with Reversed Stereochemistry. Biochemistry 55:1226-38
Bauman, Joseph D; Harrison, Jerry Joe E K; Arnold, Eddy (2016) Rapid experimental SAD phasing and hot-spot identification with halogenated fragments. IUCrJ 3:51-60

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