The effects of retinoic acids on gene expression is mediated by ligand-inducible transcription factors known as retinoid nuclear receptors. The retinoid X receptor (RXR), which is activated by the vitamin A derivative 9-cis-retinoic acid, is unique in that it can function as a homodimer, but can also associate with other nuclear receptors, as for example, the vitamin D-, the retinoic acid-, and thyroid homone-receptors, and thus plays a central role in regulating several signaling pathways at the level of the genome. We are interested in the molecular mechanisms by which the activities of retinoid receptors are regulated. We previously demonstrated that RXR forms tetramers with a high affinity and that the self-association of the receptor is tightly regulated by its cognate ligand. Over the past year we investigated the role of tetramer formation by RXR in regulating the receptor's transcriptional activity, and identified the location of the protein region that mediates tetramer formation. Mutational analyses indicated that this region critically containes two phenylaline residues located in helix 11 at the carboxyl terminus of the protein. Computer modeling of possible protein-protein interactions between two RXR dimers further supported the proposed location of the tetramerization interface. These findings, combined with the additional observations that ligand-induced dissociation of RXR tetramers is critical for the transcriptional activity of the receptor, led us to propose that the tetramerization region is impotant for the receptor's transcriptional activity. Ongoing studies are focusing on the implications of tetramer-formation by RXR for its interactions with other nuclear receptors. In addition, studies aimed at deciphering the role of the receptor's tetramerization interface in transcriptional regulation by RXR are in progress.
Chiang, Chi-Tung; Shores, Kevin S; Freindorf, Marek et al. (2008) Size-restricted proton transfer within toluene-methanol cluster ions. J Phys Chem A 112:11559-65 |
Kazmierkiewicz, Rajmund; Liwo, Adam; Scheraga, Harold A (2003) Addition of side chains to a known backbone with defined side-chain centroids. Biophys Chem 100:261-80 |
Kazmierkiewicz, Rajmund; Liwo, Adam; Scheraga, Harold A (2002) Energy-based reconstruction of a protein backbone from its alpha-carbon trace by a Monte-Carlo method. J Comput Chem 23:715-23 |
Liwo, Adam; Arlukowicz, Piotr; Czaplewski, Cezary et al. (2002) A method for optimizing potential-energy functions by a hierarchical design of the potential-energy landscape: application to the UNRES force field. Proc Natl Acad Sci U S A 99:1937-42 |
Scheraga, Harold A; Pillardy, Jaroslaw; Liwo, Adam et al. (2002) Evolution of physics-based methodology for exploring the conformational energy landscape of proteins. J Comput Chem 23:28-34 |
Scheraga, Harold A; Vila, Jorge A; Ripoll, Daniel R (2002) Helix-coil transitions re-visited. Biophys Chem 101-102:255-65 |
Pillardy, J; Arnautova, Y A; Czaplewski, C et al. (2001) Conformation-family Monte Carlo: a new method for crystal structure prediction. Proc Natl Acad Sci U S A 98:12351-6 |
Vila, J A; Ripoll, D R; Scheraga, H A (2001) Influence of lysine content and pH on the stability of alanine-based copolypeptides. Biopolymers 58:235-46 |
Pillardy, J; Czaplewski, C; Liwo, A et al. (2001) Recent improvements in prediction of protein structure by global optimization of a potential energy function. Proc Natl Acad Sci U S A 98:2329-33 |
Czaplewski, C; Rodziewicz-Motowidlo, S; Liwo, A et al. (2000) Molecular simulation study of cooperativity in hydrophobic association. Protein Sci 9:1235-45 |
Showing the most recent 10 out of 20 publications