This subproject is one of many research subprojects utilizing the resources provided by a Center grant funded by NIH/NCRR. The subproject and investigator (PI) may have received primary funding from another NIH source, and thus could be represented in other CRISP entries. The institution listed is for the Center, which is not necessarily the institution for the investigator. Tumor-induced angiogenesis, the formation of new blood vessels from existing vasculature in response to chemical signals from a tumor, is a crucial step in cancer development and progression. Although the sequential steps involved in tumor-induced angiogenesis are well known, the interplay between the biochemical and biomechanical mechanisms (e.g., cell-cell interactions, cell-matrix interactions, and intracellular signaling pathways) and their effects on angiogenesis is largely unresolved. The focus of this research is to develop a cell-based model of tumor-induced angiogenesis that incorporates the evolving composition of the stroma and the role of cellular interactions with its major component, the extracellular matrix, in order to better understand how to manipulate these processes for therapeutic gain. Key features of the biophysical model include the following: (1) linking processes occurring on multiple time scales, (2) controlling processes at the level of the individual cell where continuous models fail, and (3) incorporating the active role of the ECM as a source of cytokines and chemokines that stimulate angiogenesis. We have developed a numerical code,ANGIO, that simulates the biophysical model, of tumor-induced angiogenesis. Using ANGIO, we will address the following key scientific questions: (1) what is the relative importance of chemotaxis and mechanical forces, such as cellular adhesion to the extracellular matrix, in endothelial cell migration, (2) how does the extracellular matrix composition and structure influence capillary sprout formation during angiogenesis, (3) how does matrix restructuring affect cell migration and vascular structure, and (4) what is the role of different VEGF isoforms and VEGF receptors in capillary guidance and formation. The results should ultimately inform and advance efforts to develop new approaches for treating cancer and other angiogenesis-dependent diseases. We request the shared memory supercomputing resources to run ANGIO, which is a serial code. Each run will be on a single processor for 10 CPU hours. For each task above, we will conduct about 1000 runs to explore the parameter ranges and to collect statistics. Hence we will requst 30,000 CPU supercomputing hours.

Agency
National Institute of Health (NIH)
Institute
National Center for Research Resources (NCRR)
Type
Biotechnology Resource Grants (P41)
Project #
2P41RR006009-16A1
Application #
7358537
Study Section
Special Emphasis Panel (ZRG1-BCMB-Q (40))
Project Start
2006-09-30
Project End
2007-07-31
Budget Start
2006-09-30
Budget End
2007-07-31
Support Year
16
Fiscal Year
2006
Total Cost
$1,012
Indirect Cost
Name
Carnegie-Mellon University
Department
Biostatistics & Other Math Sci
Type
Schools of Arts and Sciences
DUNS #
052184116
City
Pittsburgh
State
PA
Country
United States
Zip Code
15213
Simakov, Nikolay A; Kurnikova, Maria G (2018) Membrane Position Dependency of the pKa and Conductivity of the Protein Ion Channel. J Membr Biol 251:393-404
Yonkunas, Michael; Buddhadev, Maiti; Flores Canales, Jose C et al. (2017) Configurational Preference of the Glutamate Receptor Ligand Binding Domain Dimers. Biophys J 112:2291-2300
Hwang, Wonmuk; Lang, Matthew J; Karplus, Martin (2017) Kinesin motility is driven by subdomain dynamics. Elife 6:
Earley, Lauriel F; Powers, John M; Adachi, Kei et al. (2017) Adeno-associated Virus (AAV) Assembly-Activating Protein Is Not an Essential Requirement for Capsid Assembly of AAV Serotypes 4, 5, and 11. J Virol 91:
Subramanian, Sandeep; Chaparala, Srilakshmi; Avali, Viji et al. (2016) A pilot study on the prevalence of DNA palindromes in breast cancer genomes. BMC Med Genomics 9:73
Ramakrishnan, N; Tourdot, Richard W; Radhakrishnan, Ravi (2016) Thermodynamic free energy methods to investigate shape transitions in bilayer membranes. Int J Adv Eng Sci Appl Math 8:88-100
Zhang, Yimeng; Li, Xiong; Samonds, Jason M et al. (2016) Relating functional connectivity in V1 neural circuits and 3D natural scenes using Boltzmann machines. Vision Res 120:121-31
Lee, Wei-Chung Allen; Bonin, Vincent; Reed, Michael et al. (2016) Anatomy and function of an excitatory network in the visual cortex. Nature 532:370-4
Murty, Vishnu P; Calabro, Finnegan; Luna, Beatriz (2016) The role of experience in adolescent cognitive development: Integration of executive, memory, and mesolimbic systems. Neurosci Biobehav Rev 70:46-58
Kuhlman, Chris J; Anil Kumar, V S; Marathe, Madhav V et al. (2015) Inhibiting diffusion of complex contagions in social networks: theoretical and experimental results. Data Min Knowl Discov 29:423-465

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