This subproject is one of many research subprojects utilizing theresources provided by a Center grant funded by NIH/NCRR. The subproject andinvestigator (PI) may have received primary funding from another NIH source,and thus could be represented in other CRISP entries. The institution listed isfor the Center, which is not necessarily the institution for the investigator. Coxiella burnetii is an obligate intracellular bacterium that causes Q fever in humans. Prolonged passage of this microorganism in tissue culture cells bypasses the normal in vivo exposure to the host immune system and leads to some clones with altered virulence and lipopolysaccharide (LPS) profiles. Two of these independently derived clones had previously been characterized with a loss of 20-30 kilobases (kb). The two deletions in question partially overlap. With respect to the wild type, one of the deletion strains is avirulent and has a LPS with a much reduced molecular weight. The other strain is fully virulent and has a LPS with an intermediate molecular weight. A 38 kb stretch of DNA that corresponds to the deleted areas has recently been sequenced from the wild type strain, and primers have been designed to verify the four deletion termini. A list of open reading frames has been compiled from the sequence data. Some of these have been assigned functions based on their similarity to motifs and/or proteins in databases, while the function of others remains elusive. The absence of a particular LPS biosynthetic gene does correlate with the more extreme LPS chemotype. Another project involves the surveillance of mosquito pools with RT-PCR assays for arbovirus carriage. These viruses are responsible for episodic outbreaks of human encephalitides in the US. The surveillance is done for a practical consideration so that mosquito control can be specifically targeted for time and location. From a theoretical perspective, it allows us to search for enzootic foci and to assess which climatological and biological parameters are associated with these outbreaks. Publications - Reno, H.E., Vodkin, M.H., and Novak, R.J.: 'Differentiation of Aedes triseriatus (Say) from Aedes hendersoni Cockerell (Diptera: Culicidae) by restriction fragment length polymorphisms of amplified ribosomal DNA.' American J. Tropical Med. & Hyg.: 62:193-199: 2000.

Agency
National Institute of Health (NIH)
Institute
National Center for Research Resources (NCRR)
Type
Biotechnology Resource Grants (P41)
Project #
5P41RR006009-18
Application #
7723103
Study Section
Special Emphasis Panel (ZRG1-BCMB-Q (40))
Project Start
2008-08-01
Project End
2009-07-31
Budget Start
2008-08-01
Budget End
2009-07-31
Support Year
18
Fiscal Year
2008
Total Cost
$473
Indirect Cost
Name
Carnegie-Mellon University
Department
Biostatistics & Other Math Sci
Type
Schools of Arts and Sciences
DUNS #
052184116
City
Pittsburgh
State
PA
Country
United States
Zip Code
15213
Simakov, Nikolay A; Kurnikova, Maria G (2018) Membrane Position Dependency of the pKa and Conductivity of the Protein Ion Channel. J Membr Biol 251:393-404
Yonkunas, Michael; Buddhadev, Maiti; Flores Canales, Jose C et al. (2017) Configurational Preference of the Glutamate Receptor Ligand Binding Domain Dimers. Biophys J 112:2291-2300
Hwang, Wonmuk; Lang, Matthew J; Karplus, Martin (2017) Kinesin motility is driven by subdomain dynamics. Elife 6:
Earley, Lauriel F; Powers, John M; Adachi, Kei et al. (2017) Adeno-associated Virus (AAV) Assembly-Activating Protein Is Not an Essential Requirement for Capsid Assembly of AAV Serotypes 4, 5, and 11. J Virol 91:
Subramanian, Sandeep; Chaparala, Srilakshmi; Avali, Viji et al. (2016) A pilot study on the prevalence of DNA palindromes in breast cancer genomes. BMC Med Genomics 9:73
Ramakrishnan, N; Tourdot, Richard W; Radhakrishnan, Ravi (2016) Thermodynamic free energy methods to investigate shape transitions in bilayer membranes. Int J Adv Eng Sci Appl Math 8:88-100
Zhang, Yimeng; Li, Xiong; Samonds, Jason M et al. (2016) Relating functional connectivity in V1 neural circuits and 3D natural scenes using Boltzmann machines. Vision Res 120:121-31
Lee, Wei-Chung Allen; Bonin, Vincent; Reed, Michael et al. (2016) Anatomy and function of an excitatory network in the visual cortex. Nature 532:370-4
Murty, Vishnu P; Calabro, Finnegan; Luna, Beatriz (2016) The role of experience in adolescent cognitive development: Integration of executive, memory, and mesolimbic systems. Neurosci Biobehav Rev 70:46-58
Shafee, Rebecca; Buckner, Randy L; Fischl, Bruce (2015) Gray matter myelination of 1555 human brains using partial volume corrected MRI images. Neuroimage 105:473-85

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