This subproject is one of many research subprojects utilizing theresources provided by a Center grant funded by NIH/NCRR. The subproject andinvestigator (PI) may have received primary funding from another NIH source,and thus could be represented in other CRISP entries. The institution listed isfor the Center, which is not necessarily the institution for the investigator.This collaboration has been a broadly based examination of tyrosine sulfation,a widespread posttranslational modification of proteins and peptide hormonesthat pass through the Golgi system of animal cells. When the project began itwas limited to a number of the peptide hormones involved in the digestiveprocess and some, for example Cholecystokinin (CCK), active both in thegastrointestinal tract and in the central nervous system. The two tissuesexpress different but closely related receptors. The tyrosine sulfationposttranslational modification has been estimated to occur to about one percentof tyrosine residues in Rat proteins. Our initial papers focused on findingand testing rules that could be used to accurately predict tyrosine sulfationsites (1,2,3). These initial studies led to the conclusions thattyrosylprotein sulfotransferase, the enzyme that catalyzes the sulfation oftyrosine residues in proteins and peptides, has a relatively low substratespecificity and is likely to modify any tyrosine residue that is sufficientlyexposed and is near negatively charged side chains.Recently it has been discovered that tyrosine sulfation of specific cytokinereceptors molecules is an essential requirement for some modes of infection ofthe HIV-1 virus and increases the efficiency of other modes of infection (5). Additionally, tyrosine sulfation has been shown to be required for the activityof some subfamilies within the glycoprotein hormone receptors family and seemsto play a similar role in other subfamilies (6). Thus we have been exploringthe possibility that other receptor families may require tyrosine sulfation foreither effective or full activity. We have been correlating our predictions oftyrosine sulfation binding sites with additional biochemical information aboutthe location of receptor binding site within the protein chain. We predict that 49 tyrosines of 32 seven-transmembrane peptide receptors aresulfated. Although we did not incorporate characteristics of confirmedsulfation sites such as clustering and conservation across species into ourprofile (Position Specific Scoring Matrix, PSSM), our predicted sitesnevertheless exhibited these characteristics. The observed conservationsuggests that there are strong evolutionary pressures to preserve selectedbiological activity of seven-transmembrane peptide receptors. The predictedtyrosine sulfation sites predominantly occur in the extracellular tail andextracellular loop 2, regions consistent with their association with bindingpockets of the receptor (4).Post-translational modification of proteins by tyrosine sulfation enhances theaffinity of extracellular ligand-receptor interactions important in the immune

Agency
National Institute of Health (NIH)
Institute
National Center for Research Resources (NCRR)
Type
Biotechnology Resource Grants (P41)
Project #
5P41RR006009-18
Application #
7723138
Study Section
Special Emphasis Panel (ZRG1-BCMB-Q (40))
Project Start
2008-08-01
Project End
2009-07-31
Budget Start
2008-08-01
Budget End
2009-07-31
Support Year
18
Fiscal Year
2008
Total Cost
$473
Indirect Cost
Name
Carnegie-Mellon University
Department
Biostatistics & Other Math Sci
Type
Schools of Arts and Sciences
DUNS #
052184116
City
Pittsburgh
State
PA
Country
United States
Zip Code
15213
Simakov, Nikolay A; Kurnikova, Maria G (2018) Membrane Position Dependency of the pKa and Conductivity of the Protein Ion Channel. J Membr Biol 251:393-404
Yonkunas, Michael; Buddhadev, Maiti; Flores Canales, Jose C et al. (2017) Configurational Preference of the Glutamate Receptor Ligand Binding Domain Dimers. Biophys J 112:2291-2300
Hwang, Wonmuk; Lang, Matthew J; Karplus, Martin (2017) Kinesin motility is driven by subdomain dynamics. Elife 6:
Earley, Lauriel F; Powers, John M; Adachi, Kei et al. (2017) Adeno-associated Virus (AAV) Assembly-Activating Protein Is Not an Essential Requirement for Capsid Assembly of AAV Serotypes 4, 5, and 11. J Virol 91:
Subramanian, Sandeep; Chaparala, Srilakshmi; Avali, Viji et al. (2016) A pilot study on the prevalence of DNA palindromes in breast cancer genomes. BMC Med Genomics 9:73
Ramakrishnan, N; Tourdot, Richard W; Radhakrishnan, Ravi (2016) Thermodynamic free energy methods to investigate shape transitions in bilayer membranes. Int J Adv Eng Sci Appl Math 8:88-100
Zhang, Yimeng; Li, Xiong; Samonds, Jason M et al. (2016) Relating functional connectivity in V1 neural circuits and 3D natural scenes using Boltzmann machines. Vision Res 120:121-31
Lee, Wei-Chung Allen; Bonin, Vincent; Reed, Michael et al. (2016) Anatomy and function of an excitatory network in the visual cortex. Nature 532:370-4
Murty, Vishnu P; Calabro, Finnegan; Luna, Beatriz (2016) The role of experience in adolescent cognitive development: Integration of executive, memory, and mesolimbic systems. Neurosci Biobehav Rev 70:46-58
Luo, Fujun; Dittrich, Markus; Cho, Soyoun et al. (2015) Transmitter release is evoked with low probability predominately by calcium flux through single channel openings at the frog neuromuscular junction. J Neurophysiol 113:2480-9

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