This subproject is one of many research subprojects utilizing the resources provided by a Center grant funded by NIH/NCRR. The subproject and investigator (PI) may have received primary funding from another NIH source, and thus could be represented in other CRISP entries. The institution listed is for the Center, which is not necessarily the institution for the investigator. Biomedical Problem Cardiac arrhythmias and fibrillation are potentially life-threatening conditions that can result from improper conduction of electrical impulses in the heart. The disruption of electrical impulses impairs the mechanical pumping of blood and hence can quickly result in brain damage and death. It is therefore important to: 1) detect when and where problems are occurring, 2) understand the conditions under which arrhythmias and fibrillation arise, and 3) develop therapies to cure or reducing the episodes of arrhythmia. The scientific questions of detection, basic mechanisms and therapies have historically been asked and answered by experimentalists. Experimental studies, however, are costly, are limited by the quantities that can be measured, often have low spatial and temporal resolution, and in humans are very dangerous. In order to aid investigation, researchers are turning to increasingly complex computer simulations to study these phenomena in more depth. Computational Problem The goal of computational cardiac electrophysiology is to obtain preliminary data to guide fewer and more targeted experimental studies. The computational requirements for such simulations are severe. Many millions of computational elements must be evaluated to """"""""step"""""""" the solution ahead in time. Those computations must be repeated several thousand times in order to calculate 1 millisecond of simulation time. For realistic simulations, several seconds or minutes must be simulated. A simple estimate indicates that for a whole human heart simulation roughly 1 heart beat would require hundreds of GB of memory and thousands or millions of CPU hours. This has historically necessitated simplifications in the size and complexity of the problem.

Agency
National Institute of Health (NIH)
Institute
National Center for Research Resources (NCRR)
Type
Biotechnology Resource Grants (P41)
Project #
5P41RR006009-20
Application #
8171889
Study Section
Special Emphasis Panel (ZRG1-BCMB-Q (40))
Project Start
2010-08-01
Project End
2013-07-31
Budget Start
2010-08-01
Budget End
2013-07-31
Support Year
20
Fiscal Year
2010
Total Cost
$1,388
Indirect Cost
Name
Carnegie-Mellon University
Department
Biostatistics & Other Math Sci
Type
Schools of Arts and Sciences
DUNS #
052184116
City
Pittsburgh
State
PA
Country
United States
Zip Code
15213
Simakov, Nikolay A; Kurnikova, Maria G (2018) Membrane Position Dependency of the pKa and Conductivity of the Protein Ion Channel. J Membr Biol 251:393-404
Yonkunas, Michael; Buddhadev, Maiti; Flores Canales, Jose C et al. (2017) Configurational Preference of the Glutamate Receptor Ligand Binding Domain Dimers. Biophys J 112:2291-2300
Hwang, Wonmuk; Lang, Matthew J; Karplus, Martin (2017) Kinesin motility is driven by subdomain dynamics. Elife 6:
Earley, Lauriel F; Powers, John M; Adachi, Kei et al. (2017) Adeno-associated Virus (AAV) Assembly-Activating Protein Is Not an Essential Requirement for Capsid Assembly of AAV Serotypes 4, 5, and 11. J Virol 91:
Subramanian, Sandeep; Chaparala, Srilakshmi; Avali, Viji et al. (2016) A pilot study on the prevalence of DNA palindromes in breast cancer genomes. BMC Med Genomics 9:73
Ramakrishnan, N; Tourdot, Richard W; Radhakrishnan, Ravi (2016) Thermodynamic free energy methods to investigate shape transitions in bilayer membranes. Int J Adv Eng Sci Appl Math 8:88-100
Zhang, Yimeng; Li, Xiong; Samonds, Jason M et al. (2016) Relating functional connectivity in V1 neural circuits and 3D natural scenes using Boltzmann machines. Vision Res 120:121-31
Lee, Wei-Chung Allen; Bonin, Vincent; Reed, Michael et al. (2016) Anatomy and function of an excitatory network in the visual cortex. Nature 532:370-4
Murty, Vishnu P; Calabro, Finnegan; Luna, Beatriz (2016) The role of experience in adolescent cognitive development: Integration of executive, memory, and mesolimbic systems. Neurosci Biobehav Rev 70:46-58
Jurkowitz, Marianne S; Patel, Aalapi; Wu, Lai-Chu et al. (2015) The YhhN protein of Legionella pneumophila is a Lysoplasmalogenase. Biochim Biophys Acta 1848:742-51

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