This subproject is one of many research subprojects utilizing the resources provided by a Center grant funded by NIH/NCRR. The subproject and investigator (PI) may have received primary funding from another NIH source, and thus could be represented in other CRISP entries. The institution listed is for the Center, which is not necessarily the institution for the investigator. This project focuses on the development and implementation of web portals and grid services for a broad variety of HPC applications that NBCR has and continues to develop. The GAMESS, APBS, and AMBER computational chemistry applications have and continue to serve as prototypes for the infrastructure development. The life sciences have entered a new era defined by large multi-scale efforts conducted by interdisciplinary teams, with fast evolving technologies. Ramifications of these changes include accessibility of diverse applications as well as vast amounts of data, which need to be processed and turned into information and new knowledge. Accessibility via a multitude of clients, and ability to enable composition of data and applications in novel ways for facilitating innovation across an interdisciplinary group of scientists is most desirable. However, issues of diverse data formats and styles must be addressed to enable seamless interoperability. Adding Web service wrappers alleviates many problems because communication is by use of strongly typed data defined using XML schemas. Workflow tools can then mediate the flow of data between applications and compose them into meaningful scientific pipelines.

Agency
National Institute of Health (NIH)
Institute
National Center for Research Resources (NCRR)
Type
Biotechnology Resource Grants (P41)
Project #
5P41RR008605-13
Application #
7358658
Study Section
Special Emphasis Panel (ZRG1-SSS-9 (40))
Project Start
2006-05-01
Project End
2007-04-30
Budget Start
2006-05-01
Budget End
2007-04-30
Support Year
13
Fiscal Year
2006
Total Cost
$16,708
Indirect Cost
Name
University of California San Diego
Department
Anatomy/Cell Biology
Type
Schools of Arts and Sciences
DUNS #
804355790
City
La Jolla
State
CA
Country
United States
Zip Code
92093
Pantoja, Joe Luis; Morgan, Ashley E; Grossi, Eugene A et al. (2017) Undersized Mitral Annuloplasty Increases Strain in the Proximal Lateral Left Ventricular Wall. Ann Thorac Surg 103:820-827
Morgan, Ashley E; Wozniak, Curtis J; Gulati, Sarthak et al. (2017) Association of Uneven MitraClip Application and Leaflet Stress in a Finite Element Model. JAMA Surg 152:111-114
Ge, Liang; Wu, Yife; Soleimani, Mehrdad et al. (2016) Moderate Ischemic Mitral Regurgitation After Posterolateral Myocardial Infarction in Sheep Alters Left Ventricular Shear but Not Normal Strain in the Infarct and Infarct Borderzone. Ann Thorac Surg 101:1691-9
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Yang, Pei-Chi; Boras, Britton W; Jeng, Mao-Tsuen et al. (2016) A Computational Modeling and Simulation Approach to Investigate Mechanisms of Subcellular cAMP Compartmentation. PLoS Comput Biol 12:e1005005
Watson, Shana R; Liu, Piaomu; Peña, Edsel A et al. (2016) Comparison of Aortic Collagen Fiber Angle Distribution in Mouse Models of Atherosclerosis Using Second-Harmonic Generation (SHG) Microscopy. Microsc Microanal 22:55-62

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