Recently, we discovered that the protease subtilisin Carlsberg can cleave proteins (BSA and ribonuclease A have served as model substrates) in neat glycerol. Questions that we are addressing now by means of mass spectrometry are: (i) Are the positions of proteolytic cleavage (i.e., enzyme specificity) in glycerol the same as in water? (ii) Are the products of proteolysis in glycerol free peptides (with unblocked carboxyl termini) or the corresponding glycerides (i.e., does water or glycerol act as a nucleophile in the enzymatic cleavage?). To address these questions, samples containing BSA and subtilisin, both in water and in glycerol, are examined by MS at to and after several hours of incubation in the respective solvents when, according FPLC analysis, significant enzymatic cleavage has occurred. Protein fi7agments formed in water and those in glycerol are compared to answer questions (i) and (ii). It wiH be ascertained whether (i) onecan alter the specificity of enzymatic protein cleavage simply by altering the reaction medium, and(ii) new materials (protein glycerides) can be prepared using our approach. To test the generality of our findings, studies will expand to other proteases (thermolysin, chymotrypsin).

Agency
National Institute of Health (NIH)
Institute
National Center for Research Resources (NCRR)
Type
Biotechnology Resource Grants (P41)
Project #
3P41RR010888-05S1
Application #
6478945
Study Section
Project Start
2000-07-01
Project End
2002-06-30
Budget Start
Budget End
Support Year
5
Fiscal Year
2001
Total Cost
$53,566
Indirect Cost
Name
Boston University
Department
Type
DUNS #
604483045
City
Boston
State
MA
Country
United States
Zip Code
02118
Lu, Yanyan; Jiang, Yan; Prokaeva, Tatiana et al. (2017) Oxidative Post-Translational Modifications of an Amyloidogenic Immunoglobulin Light Chain Protein. Int J Mass Spectrom 416:71-79
Sethi, Manveen K; Zaia, Joseph (2017) Extracellular matrix proteomics in schizophrenia and Alzheimer's disease. Anal Bioanal Chem 409:379-394
Hu, Han; Khatri, Kshitij; Zaia, Joseph (2017) Algorithms and design strategies towards automated glycoproteomics analysis. Mass Spectrom Rev 36:475-498
Ji, Yuhuan; Bachschmid, Markus M; Costello, Catherine E et al. (2016) S- to N-Palmitoyl Transfer During Proteomic Sample Preparation. J Am Soc Mass Spectrom 27:677-85
Hu, Han; Khatri, Kshitij; Klein, Joshua et al. (2016) A review of methods for interpretation of glycopeptide tandem mass spectral data. Glycoconj J 33:285-96
Pu, Yi; Ridgeway, Mark E; Glaskin, Rebecca S et al. (2016) Separation and Identification of Isomeric Glycans by Selected Accumulation-Trapped Ion Mobility Spectrometry-Electron Activated Dissociation Tandem Mass Spectrometry. Anal Chem 88:3440-3
Wang, Yun Hwa Walter; Meyer, Rosana D; Bondzie, Philip A et al. (2016) IGPR-1 Is Required for Endothelial Cell-Cell Adhesion and Barrier Function. J Mol Biol 428:5019-5033
Steinhorn, Benjamin S; Loscalzo, Joseph; Michel, Thomas (2015) Nitroglycerin and Nitric Oxide--A Rondo of Themes in Cardiovascular Therapeutics. N Engl J Med 373:277-80
Walsh, Erica M; Niu, MengMeng; Bergholz, Johann et al. (2015) Nutlin-3 down-regulates retinoblastoma protein expression and inhibits muscle cell differentiation. Biochem Biophys Res Commun 461:293-9
Théberge, Roger; Dikler, Sergei; Heckendorf, Christian et al. (2015) MALDI-ISD Mass Spectrometry Analysis of Hemoglobin Variants: a Top-Down Approach to the Characterization of Hemoglobinopathies. J Am Soc Mass Spectrom 26:1299-310

Showing the most recent 10 out of 253 publications