The Sorger group will continue its quantitative analysis of signal transduction in mammalian cells withparticular focus on pathways downstream of ErbB, IGF1 and cMet growth factor receptors and TNF, TRAILand Fas death receptors. Measurement in single cells and cell populations will be accompanied bymathematical modeling using a variety of methods ranging from purely statistical to physico-chemical. TheGunawardena group will work closely with members of the Sorger group, and with other CDP labs, indeveloping new methods to model and analyze biological networks. Development and application of theLittle b programming environment will be of particular importance.With respect to Core activities the focus will be on efficient reagent acquisition, generation and distribution inthe Molecular Genetics core and web-based information technologies in the Informatics Core. Theinformatics core will develop methods for integrating experiments and models, while also providingprogramming support for central activities resources as CDPWiki, the CDP web site and conferenceregistration.The Outreach core is responsible for overall management of non-scientific programs in CDP across twocampuses, with particular focus on annual meetings, retreats, student and educational activities andrecruiting for the sabbatical program. Financial support and scientific mentors for the New England ScienceSymposium will also be provided. HMS-based administration will support the cores in their programmaticfunctions.The outreach core will work closely with the Scientific Coordination team, which comprises highlyexperienced postdoctoral fellows, as well as with the PI, in preparing annual reports, updating the web siteand guiding collaborative projects among CDP labs.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Specialized Center (P50)
Project #
2P50GM068762-06
Application #
7695124
Study Section
Special Emphasis Panel (ZGM1-CBCB-4 (SB))
Project Start
2008-09-01
Project End
2013-08-31
Budget Start
2008-09-01
Budget End
2009-08-31
Support Year
6
Fiscal Year
2008
Total Cost
$79,866
Indirect Cost
Name
Massachusetts Institute of Technology
Department
Type
DUNS #
001425594
City
Cambridge
State
MA
Country
United States
Zip Code
02139
Jogalekar, Manasi P; Cooper, Leigh G; Serrano, Elba E (2017) Hydrogel Environment Supports Cell Culture Expansion of a Grade IV Astrocytoma. Neurochem Res 42:2610-2624
Knight, V Bleu; Serrano, Elba E (2017) Hydrogel scaffolds promote neural gene expression and structural reorganization in human astrocyte cultures. PeerJ 5:e2829
Jaqaman, Khuloud; Galbraith, James A; Davidson, Michael W et al. (2016) Changes in single-molecule integrin dynamics linked to local cellular behavior. Mol Biol Cell 27:1561-9
Trujillo-Provencio, Casilda; Powers, TuShun R; Sultemeier, David R et al. (2016) RNA Extraction from Xenopus Auditory and Vestibular Organs for Molecular Cloning and Expression Profiling with RNA-Seq and Microarrays. Methods Mol Biol 1427:73-92
Hsu, Albert T; Barrett, Christopher D; DeBusk, George M et al. (2015) Kinetics and Role of Plasma Matrix Metalloproteinase-9 Expression in Acute Lung Injury and the Acute Respiratory Distress Syndrome. Shock 44:128-36
Dutta, Sanjib; Ryan, Jeremy; Chen, T Scott et al. (2015) Potent and specific peptide inhibitors of human pro-survival protein Bcl-xL. J Mol Biol 427:1241-1253
Landry, Benjamin D; Clarke, David C; Lee, Michael J (2015) Studying Cellular Signal Transduction with OMIC Technologies. J Mol Biol 427:3416-40
Ramírez-Gordillo, Daniel; Powers, TuShun R; van Velkinburgh, Jennifer C et al. (2015) RNA-Seq and microarray analysis of the Xenopus inner ear transcriptome discloses orthologous OMIM(®) genes for hereditary disorders of hearing and balance. BMC Res Notes 8:691
Qian, Wen-Jian; Park, Jung-Eun; Grant, Robert et al. (2015) Neighbor-directed histidine N (?)-alkylation: A route to imidazolium-containing phosphopeptide macrocycles. Biopolymers 104:663-73
AlQuraishi, Mohammed; Koytiger, Grigoriy; Jenney, Anne et al. (2014) A multiscale statistical mechanical framework integrates biophysical and genomic data to assemble cancer networks. Nat Genet 46:1363-1371

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