The Microfluidics and Synthetic Biology Core will provide state-of-the-art technology and expertise for the manufacture and use of high throughput, single-cell data collection devices in the life sciences. The Core will assist users in designing and manufacturing custom microfluidic devices, provide users with the microscopic resources needed to gather high quality, single-cell data, and work closely with the Network Assembly and Mathematical Modeling Core (Research Core C) to help users analyze their data. The Core will accomplish these tasks through four Specific Aims. First, the core aims to rapidly and reliably create experimental tools for users by leveraging a state-of-the-art manufacturing facility. It will seek to increase the use of microfluidic devices in the life sciences by developing and distributing easy-to-use, reliable microfluidic devices that are custom made for research needs of users. Second, it will conduct cutting edge microfluidics research into improved devices for novel organisms and laboratory techniques. The Core plans on developing microfluidic devices for isolating and culturing native bacteria from environmental samples, as well as large-scale evolution devices capable of selecting beneficial traits in a population of microbes. Third, it aims to educate members of the life sciences community in the development, production and use of microfluidic devices. It will provide numerous opportunities for Center members to learn microfluidic manufacturing techniques and the necessary experimental skills for using these tools. Fourth and finally, the Core will develop and distribute open source hardware and software for supporting microfluidics research. We will model this effort after our successful dial-a-wave system, which is fully described online in a freely-accessible webpage. Detailed instructions for assembling hardware will be provided as well as made-to-order systems for research groups both in the Center and at other institutions. The Core leader, Dr. Jeff Hasty, and the lab's supervisor, Dr. Michael Ferry, are leaders in the field of synthetic biology and the use of microfluidics tools in the life sciences. Together they will continue their work assisting the research of all investigators interested in exploring these powerful devices.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Specialized Center (P50)
Project #
2P50GM085764-06
Application #
8957389
Study Section
Special Emphasis Panel (ZGM1)
Project Start
Project End
Budget Start
2015-09-01
Budget End
2016-05-31
Support Year
6
Fiscal Year
2015
Total Cost
Indirect Cost
Name
University of California San Diego
Department
Type
DUNS #
804355790
City
La Jolla
State
CA
Country
United States
Zip Code
92093
Muse, Evan D; Yu, Shan; Edillor, Chantle R et al. (2018) Cell-specific discrimination of desmosterol and desmosterol mimetics confers selective regulation of LXR and SREBP in macrophages. Proc Natl Acad Sci U S A 115:E4680-E4689
Bui, Nam; Huang, Justin K; Bojorquez-Gomez, Ana et al. (2018) Disruption of NSD1 in Head and Neck Cancer Promotes Favorable Chemotherapeutic Responses Linked to Hypomethylation. Mol Cancer Ther 17:1585-1594
Huang, Justin K; Carlin, Daniel E; Yu, Michael Ku et al. (2018) Systematic Evaluation of Molecular Networks for Discovery of Disease Genes. Cell Syst 6:484-495.e5
Ozturk, Kivilcim; Dow, Michelle; Carlin, Daniel E et al. (2018) The Emerging Potential for Network Analysis to Inform Precision Cancer Medicine. J Mol Biol 430:2875-2899
Yan, Jian; Chen, Shi-An A; Local, Andrea et al. (2018) Histone H3 lysine 4 monomethylation modulates long-range chromatin interactions at enhancers. Cell Res 28:204-220
Antonova-Koch, Yevgeniya; Meister, Stephan; Abraham, Matthew et al. (2018) Open-source discovery of chemical leads for next-generation chemoprotective antimalarials. Science 362:
Zarrinpar, Amir; Chaix, Amandine; Xu, Zhenjiang Z et al. (2018) Antibiotic-induced microbiome depletion alters metabolic homeostasis by affecting gut signaling and colonic metabolism. Nat Commun 9:2872
Cowell, Annie N; Istvan, Eva S; Lukens, Amanda K et al. (2018) Mapping the malaria parasite druggable genome by using in vitro evolution and chemogenomics. Science 359:191-199
Hoeksema, Marten A; Glass, Christopher K (2018) Nature and nurture of tissue-specific macrophage phenotypes. Atherosclerosis :
Preissl, Sebastian; Fang, Rongxin; Huang, Hui et al. (2018) Single-nucleus analysis of accessible chromatin in developing mouse forebrain reveals cell-type-specific transcriptional regulation. Nat Neurosci 21:432-439

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