Abstract

BlONINFORMATICS CORE AND HUB OF INNOVATION Mission The Bioinformatics Core Facility will provide scientific, technical and administrative support for the computational needs of META CSB research. The Bioinformatics Core Facility will provide expertise in mathematical and statistical methods and in software applications, will help individual users and lab groups to configure and launch virtual machines in a cloud computing environment, and will help train the next generation of bioinformaticians.

  Funding Agency

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Specialized Center (P50)
Project #
5P50GM098911-02
Application #
8546421
Study Section
Special Emphasis Panel (ZGM1-CBCB-3)
Project Start
Project End
Budget Start
2013-09-01
Budget End
2014-08-31
Support Year
2
Fiscal Year
2013
Total Cost
$231,433
Indirect Cost
$71,824

  Institution

Name
University of Oregon
Department
Type
DUNS #
948117312
City
Eugene
State
OR
Country
United States
Zip Code
97403

  Publications

Rolig, Annah S; Sweeney, Emily Goers; Kaye, Lila E et al. (2018) A bacterial immunomodulatory protein with lipocalin-like domains facilitates host-bacteria mutualism in larval zebrafish. Elife 7:
Wiles, Travis J; Wall, Elena S; Schlomann, Brandon H et al. (2018) Modernized Tools for Streamlined Genetic Manipulation and Comparative Study of Wild and Diverse Proteobacterial Lineages. MBio 9:
Leve, Leslie D; Neiderhiser, Jenae M; Harold, Gordon T et al. (2018) Naturalistic Experimental Designs as Tools for Understanding the Role of Genes and the Environment in Prevention Research. Prev Sci 19:68-78
Schlomann, Brandon H (2018) Stationary moments, diffusion limits, and extinction times for logistic growth with random catastrophes. J Theor Biol 454:154-163
Logan, Savannah L; Thomas, Jacob; Yan, Jinyuan et al. (2018) The Vibrio cholerae type VI secretion system can modulate host intestinal mechanics to displace gut bacterial symbionts. Proc Natl Acad Sci U S A 115:E3779-E3787
Ganz, J; Baker, R P; Hamilton, M K et al. (2018) Image velocimetry and spectral analysis enable quantitative characterization of larval zebrafish gut motility. Neurogastroenterol Motil 30:e13351
Massaquoi, Michelle S; Guillemin, Karen (2018) Evolving in a Microbial Soup: You Are What They Eat. Dev Cell 47:682-683
Logan, Savannah L; Dudley, Christopher; Baker, Ryan P et al. (2018) Automated high-throughput light-sheet fluorescence microscopy of larval zebrafish. PLoS One 13:e0198705
Fahimipour, Ashkaan K; Hartmann, Erica M; Siemens, Andrew et al. (2018) Daylight exposure modulates bacterial communities associated with household dust. Microbiome 6:175
Parthasarathy, Raghuveer (2018) Monitoring microbial communities using light sheet fluorescence microscopy. Curr Opin Microbiol 43:31-37

Showing the most recent 10 out of 46 publications