Antigen presentation is an obligatory step in the development of specific antibody and cellular immune responses that protect individuals from infection. Understanding this process should lead to novel approaches to control immune responses including the development new and more effective vaccines. The theme of this project remains the analysis of how antigens (Ags) are processed and presented to T lymphocytes. The central hypothesis of this project is that class I Ag processing involves the cleavage of Ags into peptides through the action of intracellular proteanases. There are 3 specific Aims: 1. What is the role of ubiquitin and the 265 proteasome in class I Ag presentation? The goals of this Aim are: (i) To evaluate whether and to what extent Ub and the 26S proteasome play a role in the processing of endogenous Ags for class I presentation; and, (ii) To test the hypothesis that the rate of degradation of Ags in the cytosol is a critical parameter that influences the efficiency of class I presentation. The experimental approach is to analyze whether blocking or enhancing degradation by the Ub-proteasome pathway of degradation affects class I-restricted Ag presentation. These studies will define the role of a major catabolic pathway in Ag processing. In addition, these experiments will define how degradation may control the immunogenicity of intracellular Ags and could provide a rationale strategy for designing more active vaccines. 2. Does a form of the proteasome generate appropriate peptides for class I presentation? The goal of this Aim is to examine whether the proteasome generates antigenic peptides and whether its activity/specificity is immunologically-regulated. The experimental approach will be to analyze in cell free systems the activity and specificity of the various forms of the proteasome from normal, mutant or interferon-stimulated cells. These experiments will define whether the 205 or 265 proteasome produce one or both appropriate cleavages for immunogenic peptides and what role the MHC- encoded subunits may play in this process. 3. How does a subset of APCs process exogenous Ags for MHC class I presentation? The goal of this Aim is to define the apparently novel pathway through which some APCs processes exogenous Ag. The experimental approach will use mutant (targeted gene disruption) and cloned-lines of these APCs in studies that will directly follow the fate of Ag and in experiments using modified-Ags and selective inhibitors to probe the key steps in this pathway.

Agency
National Institute of Health (NIH)
Institute
National Institute of Allergy and Infectious Diseases (NIAID)
Type
Research Project (R01)
Project #
5R01AI020248-12
Application #
2061152
Study Section
Allergy and Immunology Study Section (ALY)
Project Start
1983-08-01
Project End
1998-07-31
Budget Start
1994-08-01
Budget End
1995-07-31
Support Year
12
Fiscal Year
1994
Total Cost
Indirect Cost
Name
Dana-Farber Cancer Institute
Department
Type
DUNS #
149617367
City
Boston
State
MA
Country
United States
Zip Code
02215
Kincaid, Eleanor Z; Murata, Shigeo; Tanaka, Keiji et al. (2016) Specialized proteasome subunits have an essential role in the thymic selection of CD8(+) T cells. Nat Immunol 17:938-45
Rock, Kenneth L; Farfán-Arribas, Diego J; Colbert, Jeff D et al. (2014) Re-examining class-I presentation and the DRiP hypothesis. Trends Immunol 35:144-52
Colbert, Jeff D; Farfán-Arribas, Diego J; Rock, Kenneth L (2013) Substrate-induced protein stabilization reveals a predominant contribution from mature proteins to peptides presented on MHC class I. J Immunol 191:5410-9
Farfán-Arribas, Diego J; Stern, Lawrence J; Rock, Kenneth L (2012) Using intein catalysis to probe the origin of major histocompatibility complex class I-presented peptides. Proc Natl Acad Sci U S A 109:16998-7003
Meriin, Anatoli B; Mense, Martin; Colbert, Jeff D et al. (2012) A novel approach to recovery of function of mutant proteins by slowing down translation. J Biol Chem 287:34264-72
Kincaid, Eleanor Z; Che, Jenny W; York, Ian et al. (2012) Mice completely lacking immunoproteasomes show major changes in antigen presentation. Nat Immunol 13:129-35
Nguyen, Tina T; Chang, Shih-Chung; Evnouchidou, Irini et al. (2011) Structural basis for antigenic peptide precursor processing by the endoplasmic reticulum aminopeptidase ERAP1. Nat Struct Mol Biol 18:604-13
Georgiadou, Dimitra; Hearn, Arron; Evnouchidou, Irini et al. (2010) Placental leucine aminopeptidase efficiently generates mature antigenic peptides in vitro but in patterns distinct from endoplasmic reticulum aminopeptidase 1. J Immunol 185:1584-92
Hearn, Arron; York, Ian A; Bishop, Courtney et al. (2010) Characterizing the specificity and cooperation of aminopeptidases in the cytosol and endoplasmic reticulum during MHC class I antigen presentation. J Immunol 184:4725-32
Rock, Kenneth L; Farfan-Arribas, Diego J; Shen, Lianjun (2010) Proteases in MHC class I presentation and cross-presentation. J Immunol 184:9-15

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