Staphylococcus aureus is an opportunistic bacterial pathogen involved in severe infections in humans. S. aureus pathogenicity islands (SaPIs) are mobile genetic elements that carry genes encoding superantigen toxins and other virulence factors, and are mobilized at high frequency by specific ?helper? bacteriophages. Many SaPIs redirect the assembly pathway of their helpers to form capsids that are smaller than those normally made by the phage. This request is for a diversity supplement to R01 AI083255 (parent grant) to support Ms. N'Toia Hawkins, a graduate student in my lab who is currently funded by a UAB diversity fellowship that expires in July 2019. The parental R01 project is focused on understanding the mobilization and size redirection process for one class of SaPIs?including SaPI1 and SaPIbov1?that are mobilized by headful packaging helper phages with isometric capsids, such as 80?. We recently described a new class of SaPIs (including SaPIbov5) that are mobilized by prolate cos phages, such as ?12. The mechanism of capsid size redirection is completely different from the SaPIs that are mobilized by headful packaging phages, and depends on a SaPI-encoded capsid protein (CP) homolog called Ccm. The overall objective of the N'Toia's project is to understand the mechanism of Ccm-mediated capsid size redirection and, more broadly, the mobilization of cos type SaPIs. We propose to incorporate this project as a supplemental aim to the parent R01 with N'Toia taking the lead, with funding from the proposed diversity supplement. The supplement project has three specific aims:
Aim 1 : Determine structures of ?12 (large) and SaPIbov5 (small) capsids Aim 2: Identify the location of Ccm in SaPIbov5 capsids Aim 3: Define the role of the CP and Ccm N-terminal domains in the size redirection process These aims will be addressed by a combination of genetics, biochemistry, cryo-EM and three-dimensional reconstruction approaches, and will lead to new insights into the process of prolate phage assembly and genetic mobilization in S. aureus. Furthermore, the project will serve as an excellent vehicle for Ms. Hawkins' training and development into an independent scientist and to help her reach her career goals.

Public Health Relevance

The emergence of virulent, antibiotic-resistant strains of Staphylococcus aureus has become a significant public health concern. Most virulence and resistance determinants in S. aureus are carried on mobile genetic elements, such as S. aureus pathogenicity islands (SaPIs), which are mobilized by bacteriophages and transferred horizontally to other bacterial cells. This project will investigate a class of SaPIs that are mobilized by cos site bacteriophages, providing novel insights into how these SaPIs become established in the bacterial population and their role in defining bacterial pathogenicity.

Agency
National Institute of Health (NIH)
Institute
National Institute of Allergy and Infectious Diseases (NIAID)
Type
Research Project (R01)
Project #
3R01AI083255-10S1
Application #
9881478
Study Section
Program Officer
Huntley, Clayton C
Project Start
2019-06-01
Project End
2024-05-31
Budget Start
2019-08-09
Budget End
2020-05-31
Support Year
10
Fiscal Year
2019
Total Cost
Indirect Cost
Name
University of Alabama Birmingham
Department
Microbiology/Immun/Virology
Type
Schools of Medicine
DUNS #
063690705
City
Birmingham
State
AL
Country
United States
Zip Code
35294
Manning, Keith A; Quiles-Puchalt, Nuria; Penadés, José R et al. (2018) A novel ejection protein from bacteriophage 80? that promotes lytic growth. Virology 525:237-247
Kizziah, James L; Manning, Keith A; Dearborn, Altaira D et al. (2017) Cleavage and Structural Transitions during Maturation of Staphylococcus aureus Bacteriophage 80? and SaPI1 Capsids. Viruses 9:
Dearborn, Altaira D; Wall, Erin A; Kizziah, James L et al. (2017) Competing scaffolding proteins determine capsid size during mobilization of Staphylococcus aureus pathogenicity islands. Elife 6:
Hill, Rosanne L L; Vlach, Jiri; Parker, Laura K et al. (2017) Derepression of SaPIbov1 Is Independent of ?NM1 Type 2 dUTPase Activity and Is Inhibited by dUTP and dUMP. J Mol Biol 429:1570-1580
Carpena, Nuria; Manning, Keith A; Dokland, Terje et al. (2016) Convergent evolution of pathogenicity islands in helper cos phage interference. Philos Trans R Soc Lond B Biol Sci 371:
Hill, Rosanne L L; Dokland, Terje (2016) The Type 2 dUTPase of Bacteriophage ?NM1 Initiates Mobilization of Staphylococcus aureus Bovine Pathogenicity Island 1. J Mol Biol 428:142-152
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Dearborn, Altaira D; Laurinmaki, Pasi; Chandramouli, Preethi et al. (2012) Structure and size determination of bacteriophage P2 and P4 procapsids: function of size responsiveness mutations. J Struct Biol 178:215-24
Damle, Priyadarshan K; Wall, Erin A; Spilman, Michael S et al. (2012) The roles of SaPI1 proteins gp7 (CpmA) and gp6 (CpmB) in capsid size determination and helper phage interference. Virology 432:277-82
Dearborn, Altaira D; Dokland, Terje (2012) Mobilization of pathogenicity islands by Staphylococcus aureus strain Newman bacteriophages. Bacteriophage 2:70-78

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