The specific aims of the last proposal entitled """"""""Antitumor Agents: Bouvardin and Luzopeptins"""""""" have been completed or are the focus of current efforts. Following efforts that first led to the total synthesis of isodityrosine, the ACE I inhibitor K-13, the aminopeptidase B inhibitors OF4949-III and OF4949-IV, and the cytotoxic agent combretastatin D-2, the efforts in this grant period have been extended to define the scope of an intramolecular Ullmann biaryl ether coupling reaction for macrocyclization closure of refractory 14-membered biaryl ethers. Its use in the total synthesis of bouvardin and O-methyl bouvardin has been completed. This methodology provided the opportunity to prepare key partial structures and analogs of the natural products that led to the completion of studies that define the structural and conformational properties that contribute to their biological properties. Importantly, this was possible only through implementation of the developed biaryl ether macrocyclization reaction by which the refractory 14-membered cycloisodityrosine-derived biaryl ethers have become synthetically accessible (30-60 percent) for such studies. Preliminary studies on the natural extension of this methodology for the preparation of vancomycin and structurally related antibiotics have been completed including the development of a substantial improvement through use of an intramolecular SnAr macrocyclization reaction (70-80 percent). These studies insure a straightforward approach to the proposed efforts on vancomycin to be conducted in the next grant period. In addition, the total synthesis of (-)-sandramycin was completed in this last grant period which served to unambiguously establish its relative and nonobvious absolute stereochemistry. These studies have been extended to a definition of its DNA binding properties (binding affinity, bisintercalation, 5'-NATN bisintercalation sequence selectivity with a preference for 5'CATG). Important information on the structural origin of these properties (minor groove binding cyic decadepsipeptide with stabilizing intercalation) has been derived from the studies to date. Similarly, a systematic and complete study of the role of the intercalating chromophores are in the process of being defined. These studies will continue in the new grant period along with extensions to the total synthesis of the luzopeptins and the accompanying SAR studies. Exciting new studies on the design, synthesis, and evaluation of DNA alkylation, cross-linking and cleaving agents based on the sandramycin template structure are detailed.

Agency
National Institute of Health (NIH)
Institute
National Cancer Institute (NCI)
Type
Research Project (R01)
Project #
3R01CA041101-14S1
Application #
2745171
Study Section
Bio-Organic and Natural Products Chemistry Study Section (BNP)
Program Officer
Wolpert, Mary K
Project Start
1985-07-01
Project End
2000-04-30
Budget Start
1998-05-01
Budget End
1999-04-30
Support Year
14
Fiscal Year
1998
Total Cost
Indirect Cost
Name
Scripps Research Institute
Department
Type
DUNS #
City
La Jolla
State
CA
Country
United States
Zip Code
92037
Wu, Zhi-Chen; Isley, Nicholas A; Boger, Dale L (2018) N-Terminus Alkylation of Vancomycin: Ligand Binding Affinity, Antimicrobial Activity, and Site-Specific Nature of Quaternary Trimethylammonium Salt Modification. ACS Infect Dis 4:1468-1474
Boger, Dale L (2017) The Difference a Single Atom Can Make: Synthesis and Design at the Chemistry-Biology Interface. J Org Chem 82:11961-11980
Okano, Akinori; Isley, Nicholas A; Boger, Dale L (2017) Peripheral modifications of [?[CH2NH]Tpg4]vancomycin with added synergistic mechanisms of action provide durable and potent antibiotics. Proc Natl Acad Sci U S A 114:E5052-E5061
Okano, Akinori; Isley, Nicholas A; Boger, Dale L (2017) Total Syntheses of Vancomycin-Related Glycopeptide Antibiotics and Key Analogues. Chem Rev 117:11952-11993
Okano, Akinori; Nakayama, Atsushi; Wu, Kejia et al. (2015) Total syntheses and initial evaluation of [?[C(?S)NH]Tpg?]vancomycin, [?[C(?NH)NH]Tpg?]vancomycin, [?[CH?NH]Tpg?]vancomycin, and their (4-chlorobiphenyl)methyl derivatives: synergistic binding pocket and peripheral modifications for the glycopeptide antib J Am Chem Soc 137:3693-704
Lee, Kiyoun; Poudel, Yam B; Glinkerman, Christopher M et al. (2015) Total synthesis of dihydrolysergic acid and dihydrolysergol: development of a divergent synthetic strategy applicable to rapid assembly of D-ring analogs. Tetrahedron 71:5897-5905
Hou, L; Jiang, J; Liu, B et al. (2014) Association between smoking and deaths due to colorectal malignant carcinoma: a national population-based case-control study in China. Br J Cancer 110:1351-8
Okano, Akinori; Nakayama, Atsushi; Schammel, Alex W et al. (2014) Total synthesis of [?[C(?NH)NH]Tpg(4)]vancomycin and its (4-chlorobiphenyl)methyl derivative: impact of peripheral modifications on vancomycin analogues redesigned for dual D-Ala-D-Ala and D-Ala-D-Lac binding. J Am Chem Soc 136:13522-5
Nakayama, Atsushi; Okano, Akinori; Feng, Yiqing et al. (2014) Enzymatic glycosylation of vancomycin aglycon: completion of a total synthesis of vancomycin and N- and C-terminus substituent effects of the aglycon substrate. Org Lett 16:3572-5
Pinchman, Joseph R; Boger, Dale L (2013) Probing the role of the vancomycin e-ring aryl chloride: selective divergent synthesis and evaluation of alternatively substituted E-ring analogues. J Med Chem 56:4116-24

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