This application is for an Administrative Supplement to Support Enhancement of Software Tools for Open Science, associated with an active parent grant ?Auditory Processing of Complex Sounds?. Over the time course of this research project (now in years 25-30), we have developed a series of computational models for the responses of auditory-nerve fibers, brainstem and midbrain neurons. We have always shared our computational models in the form of MATLAB code, and these models have been used extensively by many labs in the auditory-research community. However, their use requires experience using MATLAB, access to or ownership of the MATLAB software, and significant computational resources. We have used the models in our own projects not only for physiological simulations, but also for predictions of psychophysical data based on physiological mechanisms. Based on our long-term experience developing and applying these computational tools, we are perfectly positioned to transition these efforts to better contribute to the NIH Strategic Plan for Data Science by translating our computational models to cloud-based resources for the wider community. We will also design and implement strategies to take advantage of and encourage use of the data-sharing resources on the Open Science Framework, and we will design direct connections between the Open Science Framework and our cloud-based computing tools, initially to be hosted as a web app on a public-facing virtual machine in the Data Center at the University of Rochester. Aspects of the NIH Strategic Plan for Data Science to which this proposal specifically contributes include: ? Supporting storage and sharing of individual datasets, ? Support of useful, generalizable and accessible tools and workflows ? Broadening utility of and access to specialized tools, ? Engaging a broader community, and ? Enhancing stewardship.

Public Health Relevance

The public-health significance of the proposed supplement project is that it will contribute to the NIH Strategic Plan for Data Science, including fostering sharing of datasets, deployment and support of accessible tools and workflows, and broadening the utility of a set of computational tools to a wider community. In general, this work is intended to support the community of auditory neuroscience researchers, who are working towards a better understanding of the auditory system, and ultimately towards amelioration of hearing loss.

Agency
National Institute of Health (NIH)
Institute
National Institute on Deafness and Other Communication Disorders (NIDCD)
Type
Research Project (R01)
Project #
3R01DC001641-29S1
Application #
10162202
Study Section
Program Officer
Miller, Roger
Project Start
1992-07-01
Project End
2023-11-30
Budget Start
2020-09-01
Budget End
2020-11-30
Support Year
29
Fiscal Year
2020
Total Cost
Indirect Cost
Name
University of Rochester
Department
Biomedical Engineering
Type
Biomed Engr/Col Engr/Engr Sta
DUNS #
041294109
City
Rochester
State
NY
Country
United States
Zip Code
14627
Carney, Laurel H (2018) Supra-Threshold Hearing and Fluctuation Profiles: Implications for Sensorineural and Hidden Hearing Loss. J Assoc Res Otolaryngol 19:331-352
Carney, Laurel H; McDonough, Joyce M (2018) Nonlinear auditory models yield new insights into representations of vowels. Atten Percept Psychophys :
Henry, Kenneth S; Amburgey, Kassidy N; Abrams, Kristina S et al. (2017) Formant-frequency discrimination of synthesized vowels in budgerigars (Melopsittacus undulatus) and humans. J Acoust Soc Am 142:2073
Henry, Kenneth S; Abrams, Kristina S; Forst, Johanna et al. (2017) Midbrain Synchrony to Envelope Structure Supports Behavioral Sensitivity to Single-Formant Vowel-Like Sounds in Noise. J Assoc Res Otolaryngol 18:165-181
Abdolrahmani ?, Mohammad; Doi, Takahiro; Shiozaki, Hiroshi M et al. (2016) Pooled, but not single-neuron, responses in macaque V4 represent a solution to the stereo correspondence problem. J Neurophysiol 115:1917-31
Henry, Kenneth S; Neilans, Erikson G; Abrams, Kristina S et al. (2016) Neural correlates of behavioral amplitude modulation sensitivity in the budgerigar midbrain. J Neurophysiol 115:1905-16
Carney, Laurel H; Li, Tianhao; McDonough, Joyce M (2015) Speech Coding in the Brain: Representation of Vowel Formants by Midbrain Neurons Tuned to Sound Fluctuations eNeuro 2:
Carney, Laurel H; Zilany, Muhammad S A; Huang, Nicholas J et al. (2014) Suboptimal use of neural information in a mammalian auditory system. J Neurosci 34:1306-13
Zilany, Muhammad S A; Bruce, Ian C; Carney, Laurel H (2014) Updated parameters and expanded simulation options for a model of the auditory periphery. J Acoust Soc Am 135:283-6
Carney, Laurel H; Ketterer, Angela D; Abrams, Kristina S et al. (2013) Detection thresholds for amplitude modulations of tones in budgerigar, rabbit, and human. Adv Exp Med Biol 787:391-8

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