The incorporation of nitrogen into biological molecules occurs through the action of a family of enzymes called glutamine amidotransferases. These enzymes transfer NH3 from the side chain of glutamine to an appropriate substrate. There are at least fourteen different glutamine amidotransferases, each catalyzing the transfer of NH3 to a different substrate. Sequence fingerprints have been identified that assign all known glutamine amidotransferase sequences to one of two families. Neither the mechanism of NH3 generation nor the tight coupling between NH3 generation and NH3 transport are understood for any of the enzymes. This important question in biological catalysis is being addressed by determination of three-dimensional structures for three different glutamine amidotransferases in both families by X-ray crystallography. Two of the structure determinations are being done by multiwavelength anomalous diffraction and represent important new applications of this crystallographic methodology. 1. Glutamine PRPP amidotransferase catalyzes the first and committed step in de novo synthesis of purine nucleotides. Defects in the purine pathway have been associated with disorders such as hyperuricemia (gout), immunodeficiency and neurological symptoms. Crystal structures are being determined for the enzyme from both B. subtilis and E. coli in order to elucidate the function of an unusual metal center in B. subtilis and higher eukaryotes that apparently has a novel regulatory function and is not catalytic. 2. GNP synthetase, another enzyme from the purine pathway, is a target of attempts to stop cell growth, specifically tumor cell growth and T-cell proliferation. Crystals of GMP synthetase with substrate and ATP bound and crystals of enzyme alone are an excellent system for structural studies of the coupling of NH3-generating and NH3-transfer activities. 3. Imidazole glycerol 3-phosphate synthase, an enzyme from the histidine pathway, is a heterodimeric glutamine amidotransferase.

Agency
National Institute of Health (NIH)
Institute
National Institute of Diabetes and Digestive and Kidney Diseases (NIDDK)
Type
Research Project (R01)
Project #
5R01DK042303-08
Application #
2331426
Study Section
Molecular and Cellular Biophysics Study Section (BBCA)
Program Officer
Laughlin, Maren R
Project Start
1990-02-01
Project End
1998-01-31
Budget Start
1997-02-01
Budget End
1998-01-31
Support Year
8
Fiscal Year
1997
Total Cost
Indirect Cost
Name
Purdue University
Department
Biology
Type
Schools of Arts and Sciences
DUNS #
072051394
City
West Lafayette
State
IN
Country
United States
Zip Code
47907
Skiba, Meredith A; Bivins, Marissa M; Schultz, John R et al. (2018) Structural Basis of Polyketide Synthase O-Methylation. ACS Chem Biol :
Skiba, Meredith A; Maloney, Finn P; Dan, Qingyun et al. (2018) PKS-NRPS Enzymology and Structural Biology: Considerations in Protein Production. Methods Enzymol 604:45-88
Tripathi, Ashootosh; Park, Sung Ryeol; Sikkema, Andrew P et al. (2018) A Defined and Flexible Pocket Explains Aryl Substrate Promiscuity of the Cahuitamycin Starter Unit-Activating Enzyme CahJ. Chembiochem 19:1595-1600
Skiba, Meredith A; Sikkema, Andrew P; Moss, Nathan A et al. (2018) Biosynthesis of t-Butyl in Apratoxin A: Functional Analysis and Architecture of a PKS Loading Module. ACS Chem Biol 13:1640-1650
Dodge, Greg J; Maloney, Finn P; Smith, Janet L (2018) Protein-protein interactions in ""cis-AT"" polyketide synthases. Nat Prod Rep 35:1082-1096
Dodge, Greg J; Ronnow, Danialle; Taylor, Richard E et al. (2018) Molecular Basis for Olefin Rearrangement in the Gephyronic Acid Polyketide Synthase. ACS Chem Biol 13:2699-2707
Skiba, Meredith A; Sikkema, Andrew P; Moss, Nathan A et al. (2017) A Mononuclear Iron-Dependent Methyltransferase Catalyzes Initial Steps in Assembly of the Apratoxin A Polyketide Starter Unit. ACS Chem Biol 12:3039-3048
Maloney, Finn P; Gerwick, Lena; Gerwick, William H et al. (2016) Anatomy of the ?-branching enzyme of polyketide biosynthesis and its interaction with an acyl-ACP substrate. Proc Natl Acad Sci U S A 113:10316-21
Stull, Frederick W; Bernard, Steffen M; Sapra, Aparna et al. (2016) Deprotonations in the Reaction of Flavin-Dependent Thymidylate Synthase. Biochemistry 55:3261-9
Skiba, Meredith A; Sikkema, Andrew P; Fiers, William D et al. (2016) Domain Organization and Active Site Architecture of a Polyketide Synthase C-methyltransferase. ACS Chem Biol 11:3319-3327

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