Visual excitation is initiated by the absorption of a photon by the 11-cis retinal chromophore in the visual pigment, rhodopsin. This event is followed by a sequence of conformational changes in the protein and by the cis direction trans isomerization of the chromophore. The long term objective of this proposal is to determine in detail the molecular mechanism for these events through the use of resonance Raman spectroscopy. This objective will be approached in the following ways: (1) The Raman spectra of rhodopsin and its primary photoproduct, bathorhodopsin, will be obtained using pigments that have been regenerated with 2H and 13C isotopic derivatives of retinal. These data will be used to assign the vibrations in these spectra. (2) The Raman and IR spectra of isotopically labeled retinal model compounds will be obtained to provide vibrational assignments for the uncomplexed chromophores. (3) A ground state modified-Urey-Bradley force field will be refined following the Wilson FG method to fit the observed vibrational data for the retinal model compound and for the pigments. The vibrational frequencies, coupling constants, and Raman intensities for the pigment bound chromophore will then be analyzed to determine the structure of the retinal chromophore in rhodopsin and bathorhodopsin. These data will be used to develop models for the chromophore-protein interactions that make these pigments such sensitive photodetectors. (4) Models for the structure of rhodopsin and bathorhodopsin which involve charge perturbation of the chromophore by the protein will be evaluated with 13C NMR experiments and CNDO calculations. (5) Resonance Raman microscopy will be used to perform analogous studies on the primary visual photochemistry in rod and cone pigments which have a wide range of absorption maxima. This will test the generality of the models developed for bovine pigments in (1) - (4).

Agency
National Institute of Health (NIH)
Institute
National Eye Institute (NEI)
Type
Research Project (R01)
Project #
5R01EY002051-09
Application #
3256449
Study Section
Visual Sciences A Study Section (VISA)
Project Start
1977-09-01
Project End
1986-08-31
Budget Start
1985-09-01
Budget End
1986-08-31
Support Year
9
Fiscal Year
1985
Total Cost
Indirect Cost
Name
University of California Berkeley
Department
Type
Schools of Arts and Sciences
DUNS #
094878337
City
Berkeley
State
CA
Country
United States
Zip Code
94704
Kukura, Philipp; McCamant, David W; Mathies, Richard A (2007) Femtosecond stimulated Raman spectroscopy. Annu Rev Phys Chem 58:461-88
Adesokan, Adeyemi A; Pan, Duohai; Fredj, Erick et al. (2007) Anharmonic vibrational calculations modeling the raman spectra of intermediates in the photoactive yellow protein (PYP) photocycle. J Am Chem Soc 129:4584-94
Kukura, Philipp; Frontiera, Renee; Mathies, Richard A (2006) Direct observation of anharmonic coupling in the time domain with femtosecond stimulated Raman scattering. Phys Rev Lett 96:238303
Kukura, Philipp; Yoon, Sangwoon; Mathies, Richard A (2006) Femtosecond stimulated Raman spectroscopy. Anal Chem 78:5953-9
Yoon, Sangwoon; McCamant, David W; Kukura, Philipp et al. (2005) Dependence of line shapes in femtosecond broadband stimulated Raman spectroscopy on pump-probe time delay. J Chem Phys 122:024505
McCamant, David W; Kukura, Philipp; Mathies, Richard A (2005) Femtosecond stimulated Raman study of excited-state evolution in bacteriorhodopsin. J Phys Chem B 109:10449-57
Kukura, Philipp; McCamant, David W; Yoon, Sangwoon et al. (2005) Structural observation of the primary isomerization in vision with femtosecond-stimulated Raman. Science 310:1006-9
Kukura, Philipp; McCamant, David W; Mathies, Richard A (2004) Femtosecond Time-Resolved Stimulated Raman Spectroscopy of the S(2) (1B(u)) Excited State of beta-Carotene. J Phys Chem A 108:5921-5
Yan, Elsa C Y; Ganim, Ziad; Kazmi, Manija A et al. (2004) Resonance Raman analysis of the mechanism of energy storage and chromophore distortion in the primary visual photoproduct. Biochemistry 43:10867-76
Lee, Soo-Y; Zhang, Donghui; McCamant, David W et al. (2004) Theory of femtosecond stimulated Raman spectroscopy. J Chem Phys 121:3632-42

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