This proposal is concerned with a broad study of the mechanisms which control the interplay between conformational changes, ligand binding, non-specific solvent effects and self-assembly in biologically significant systems. Thermodynamic, kinetic and conformational studies will be carried out in rigorous manner of the detailed mechanism of the self-assembly of purified brain tubulin to microtubules, with particular emphasis on the manner in which certain ligands, such as calcium and magnesium ions, control the assembly and disassembly of microtubules on the molecular level, the manner in which the GTP-GDP system modulates the stability of the assembled organelles, the linkage between ligand binding, conformation changes and assembly, and the identification of possible assembly intermediates. Also studies will be carried out on the mechanism by which some solvent additives (such as sugars, salts and glycols) stabilize biological structures and affect the activity of enzymes, on the relation between the fine structure of proteins and their biological function, and on the conformational pathway in which such active structures are generated during enzyme activation. The methods used will be those of macromolecular physical biochemistry, such as sedimentation, specrofluorometry with energy transfer, densimetry, quantitative gel chromatogrpahy and light scattering, as well as controlled chemical modification. This research is aimed at the problem of the complex interplay of non-covalent interactions and biological function and the eventual understanding of how organelles are assembled and stabilized within cells and of the manner in which extraneous substrates, such as carcinogenic materials and drugs, perform their action.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM014603-19
Application #
3268648
Study Section
Biophysics and Biophysical Chemistry A Study Section (BBCA)
Project Start
1976-12-01
Project End
1986-11-30
Budget Start
1984-12-01
Budget End
1985-11-30
Support Year
19
Fiscal Year
1985
Total Cost
Indirect Cost
Name
Brandeis University
Department
Type
Schools of Arts and Sciences
DUNS #
616845814
City
Waltham
State
MA
Country
United States
Zip Code
Ward, L D; Seckler, R; Timasheff, S N (1994) Energy transfer studies of the distances between the colchicine, ruthenium red, and bisANS binding sites on calf brain tubulin. Biochemistry 33:11900-8
Kita, Y; Arakawa, T; Lin, T Y et al. (1994) Contribution of the surface free energy perturbation to protein-solvent interactions. Biochemistry 33:15178-89
Perez-Ramirez, B; Timasheff, S N (1994) Cosolvent modulation of the tubulin-colchicine GTPase-activating conformational change: strength of the enzymatic activity. Biochemistry 33:6262-7
Perez-Ramirez, B; Shearwin, K E; Timasheff, S N (1994) The colchicine-induced GTPase activity of tubulin: state of the product. Activation by microtubule-promoting cosolvents. Biochemistry 33:6253-61
Shearwin, K E; Perez-Ramirez, B; Timasheff, S N (1994) Linkages between the dissociation of alpha beta tubulin into subunits and ligand binding: the ground state of tubulin is the GDP conformation. Biochemistry 33:885-93
Ward, L D; Timasheff, S N (1994) Cooperative multiple binding of bisANS and daunomycin to tubulin. Biochemistry 33:11891-9
Shearwin, K E; Timasheff, S N (1994) Effect of colchicine analogues on the dissociation of alpha beta tubulin into subunits: the locus of colchicine binding. Biochemistry 33:894-901
Lin, T Y; Timasheff, S N (1994) Why do some organisms use a urea-methylamine mixture as osmolyte? Thermodynamic compensation of urea and trimethylamine N-oxide interactions with protein. Biochemistry 33:12695-701
Bhat, R; Timasheff, S N (1992) Steric exclusion is the principal source of the preferential hydration of proteins in the presence of polyethylene glycols. Protein Sci 1:1133-43
Prakash, V; Timasheff, S N (1992) Aging of tubulin at neutral pH: the destabilizing effect of vinca alkaloids. Arch Biochem Biophys 295:137-45

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