. Ongoing studies of the mechanistic enzymology of complex polyketide natural product biosynthesis will be extended, with focus on the biosynthesis of the macrolide antibiotics erythromycin, methymycin, picromycin, and tylosin, the protein phosphatase inhibitor fostriecin, and the polyether antibiotic nanchangmycin. Each of these metabolites is assembled by closely related, exceptionally large, multifunctional, modular proteins known as polyketide synthases (PKSs). A combination of chemical, enzymological, and protein molecular engineering techniques is being used to elucidate the molecular basis for the programming and mechanism of the complex series of reactions by which these polyketides are assembled. The emphasis is on the mechanism, stereochemistry, and specificity of multistep, enzyme- catalyzed transformations leading to the formation of these medicinally important natural products. 1) The enzymology and mechanism of double bond formation in complex polyketide biosynthesis will be probed by expression in E. coli of individual modules of several PKS proteins, each responsible for a single round of polyketide chain elongation and functional group modification. Selected mutants will be generated in order to establish the structure and stereochemistry of otherwise transient chain elongation intermediates. 2) Pair wise incubations of ketosynthase and ketoreductase domains from several PKS modules will be used to determine the mechanistic role played by each domain in fixing the stereochemistry of methyl and hydroxyl substituents in the resultant polyketide products. ? ? The results of these studies will be not only be broadly applicable to the understanding of polyketide antibiotic biosynthesis will contribute valuable tools for the rational engineering of novel polyketides with potential antibiotic, antitumor, and other activities. In addition, the results obtained will provide fundamental insights into how catalysis and molecular recognition control both substrate specificity and product molecular diversity in Nature. ? ? ?

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
2R01GM022172-31A1
Application #
7140451
Study Section
Synthetic and Biological Chemistry B Study Section (SBCB)
Program Officer
Ikeda, Richard A
Project Start
1977-08-01
Project End
2010-06-30
Budget Start
2006-07-01
Budget End
2007-06-30
Support Year
31
Fiscal Year
2006
Total Cost
$355,338
Indirect Cost
Name
Brown University
Department
Chemistry
Type
Schools of Arts and Sciences
DUNS #
001785542
City
Providence
State
RI
Country
United States
Zip Code
02912
Xie, Xinqiang; Cane, David E (2018) Stereospecific Formation of Z-Trisubstituted Double Bonds by the Successive Action of Ketoreductase and Dehydratase Domains from trans-AT Polyketide Synthases. Biochemistry 57:3126-3129
Xie, Xinqiang; Cane, David E (2018) pH-Rate profiles establish that polyketide synthase dehydratase domains utilize a single-base mechanism. Org Biomol Chem 16:9165-9170
Xie, Xinqiang; Khosla, Chaitan; Cane, David E (2017) Elucidation of the Stereospecificity of C-Methyltransferases from trans-AT Polyketide Synthases. J Am Chem Soc 139:6102-6105
Shah, Dhara D; You, Young-Ok; Cane, David E (2017) Stereospecific Formation of E- and Z-Disubstituted Double Bonds by Dehydratase Domains from Modules 1 and 2 of the Fostriecin Polyketide Synthase. J Am Chem Soc 139:14322-14330
Xie, Xinqiang; Garg, Ashish; Khosla, Chaitan et al. (2017) Mechanism and Stereochemistry of Polyketide Chain Elongation and Methyl Group Epimerization in Polyether Biosynthesis. J Am Chem Soc 139:3283-3292
Xie, Xinqiang; Garg, Ashish; Khosla, Chaitan et al. (2017) Elucidation of the Cryptic Methyl Group Epimerase Activity of Dehydratase Domains from Modular Polyketide Synthases Using a Tandem Modules Epimerase Assay. J Am Chem Soc 139:9507-9510
Robbins, Thomas; Kapilivsky, Joshuah; Cane, David E et al. (2016) Roles of Conserved Active Site Residues in the Ketosynthase Domain of an Assembly Line Polyketide Synthase. Biochemistry 55:4476-84
Robbins, Thomas; Liu, Yu-Chen; Cane, David E et al. (2016) Structure and mechanism of assembly line polyketide synthases. Curr Opin Struct Biol 41:10-18
Ostrowski, Matthew P; Cane, David E; Khosla, Chaitan (2016) Recognition of acyl carrier proteins by ketoreductases in assembly line polyketide synthases. J Antibiot (Tokyo) 69:507-10
Xie, Xinqiang; Garg, Ashish; Keatinge-Clay, Adrian T et al. (2016) Epimerase and Reductase Activities of Polyketide Synthase Ketoreductase Domains Utilize the Same Conserved Tyrosine and Serine Residues. Biochemistry 55:1179-86

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