The long-term goal is to understand biomolecular organization and function particularly at critical intermolecular interfaces in biology, at various structural levels. One focus is on integral transmembrane proteins: Structural studies of acetylcholine receptors, fundamental to all vertebrate neuromuscular communication are to define the arrangment of Alpha2BetaGammaDelta subunits, to define the polypeptide folding within each subunit using immuno-electron microscopy and low dose imaging of frozen hydrated samples, to define main immunogenic regions in the disease myasthenia gravis, and to define ligand and toxin sites. Changes in structure upon activation will be analyzed to define the mechanisms of channel formation, subunit assembly, and activation of the channel and disensitization. A long-term goal is to understand the insertion of membrane protein sequences, and formation of multimeric membrane proteins. Crystallized colicin Ia and possibly Ib, 80,000 dalton soluble proteins that make transmembrane ion channels across membranes, are to be defined in their presumed soluble conformation, at atomic resolution using x-ray crystallography; chemical studies are to define mechanisms of transmembrane channel formation in these single hit lethal antibacterial molecules. Various interferons have been or are being crystallized as precursor to crystallographic analysis. The structure will be a template for studies of the critical molecular surface, alteration of the surface by site specific mutagenesis, and generation of new anti-viral functions aimed at defining the mechanisms of anti-viral action. Highest resolution studies of trypsin and trypsinogen are to give fundamental new basic information about the dynamics, solvation, and reaction chemistry of this allosteric protein system. The goal is an intimate understanding of energetic factors which determine protein stability, allosteric effects, and the role of dynamics and orientation in this protein.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM024485-10
Application #
3272327
Study Section
Biophysics and Biophysical Chemistry B Study Section (BBCB)
Project Start
1979-04-01
Project End
1989-03-31
Budget Start
1986-04-01
Budget End
1987-03-31
Support Year
10
Fiscal Year
1986
Total Cost
Indirect Cost
Name
University of California San Francisco
Department
Type
Schools of Medicine
DUNS #
073133571
City
San Francisco
State
CA
Country
United States
Zip Code
94143
Kintzer, Alexander F; Green, Evan M; Dominik, Pawel K et al. (2018) Structural basis for activation of voltage sensor domains in an ion channel TPC1. Proc Natl Acad Sci U S A 115:E9095-E9104
Finer-Moore, Janet S; Lee, Tom T; Stroud, Robert M (2018) A Single Mutation Traps a Half-Sites Reactive Enzyme in Midstream, Explaining Asymmetry in Hydride Transfer. Biochemistry 57:2786-2795
Kumar, Hemant; Finer-Moore, Janet S; Jiang, Xiaoxu et al. (2018) Crystal Structure of a ligand-bound LacY-Nanobody Complex. Proc Natl Acad Sci U S A 115:8769-8774
Kintzer, Alexander F; Stroud, Robert M (2018) On the structure and mechanism of two-pore channels. FEBS J 285:233-243
Boswell-Casteel, Rebba C; Johnson, Jennifer M; Stroud, Robert M et al. (2016) Integral Membrane Protein Expression in Saccharomyces cerevisiae. Methods Mol Biol 1432:163-86
Kintzer, Alexander F; Stroud, Robert M (2016) Structure, inhibition and regulation of two-pore channel TPC1 from Arabidopsis thaliana. Nature 531:258-62
Salo-Ahen, Outi M H; Tochowicz, Anna; Pozzi, Cecilia et al. (2015) Hotspots in an obligate homodimeric anticancer target. Structural and functional effects of interfacial mutations in human thymidylate synthase. J Med Chem 58:3572-81
Johri, Atul K; Oelmüller, Ralf; Dua, Meenakshi et al. (2015) Fungal association and utilization of phosphate by plants: success, limitations, and future prospects. Front Microbiol 6:984
Kim, JungMin; Wu, Shenping; Tomasiak, Thomas M et al. (2015) Subnanometre-resolution electron cryomicroscopy structure of a heterodimeric ABC exporter. Nature 517:396-400
Monk, Brian C; Tomasiak, Thomas M; Keniya, Mikhail V et al. (2014) Architecture of a single membrane spanning cytochrome P450 suggests constraints that orient the catalytic domain relative to a bilayer. Proc Natl Acad Sci U S A 111:3865-70

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