The goal of this research is to determine the molecular mechanism and driving forces that regulate communication between the oxygen binding sites of human hemoglobin. The overall oxygen binding properties of hemoglobin are well-documented, however, the molecular basis of positive cooperativity, which is crucial to physiological efficacy, is not understood. The primary functional units within the hemoglobin tetramer have only recently been identified as its alphabeta dimer components, as shown by the distribution of structural energetics among intermediate states. The order of oxygen binding, as well as its release, follows specific combinatorial rules, binding preferentially to both sites on one dimer within the tetramer, then binding to the sites on the remaining dimer. This functional asymmetry within the hemoglobin tetramer is also observed in initial studies on hybrid tetramers, where one alphabeta dimer is normal but the other dimer contains a single amino acid in the cross-dimer interface. The effect of the modification on the cooperative free energy of oxygen binding is felt only on the modified dimer, while the normal dimer is not significantly affected. Dr. Ackers plans to extend these studies for the 02 intermediates using recombinant hemoglobins with designed sets of altered residue sites. Subunit interactions of the recombinant systems will be studied by techniques of kinetics, analytical gel chromatography, cryogenic isoelectric focusing, as well as by direct 02 binding. As the Hb regulatory system is an important prototype for a large family of cooperative multi-site regulatory assemblies, the methods developed by this program should have wide applicability. Deeper understanding of human Hb mechanisms is also of current interest to the potential design of red cell substitute oxygen carriers and hemoglobin-based drug delivery systems.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM024486-26
Application #
6621691
Study Section
Molecular and Cellular Biophysics Study Section (BBCA)
Program Officer
Whitmarsh, John
Project Start
1989-09-01
Project End
2005-11-30
Budget Start
2002-12-01
Budget End
2003-11-30
Support Year
26
Fiscal Year
2003
Total Cost
$432,121
Indirect Cost
Name
Washington University
Department
Biochemistry
Type
Schools of Medicine
DUNS #
068552207
City
Saint Louis
State
MO
Country
United States
Zip Code
63130
Munro, Peter D; Ackers, Gary K; Shearwin, Keith E (2016) Aspects of protein-DNA interactions: a review of quantitative thermodynamic theory for modelling synthetic circuits utilising LacI and CI repressors, IPTG and the reporter gene lacZ. Biophys Rev 8:331-345
Holt, Jo M; Klinger, Alexandra L; Yarian, Connie S et al. (2005) Asymmetric distribution of cooperativity in the binding cascade of normal human hemoglobin. 1. Cooperative and noncooperative oxygen binding in Zn-substituted hemoglobin. Biochemistry 44:11925-38
Holt, Jo M; Ackers, Gary K (2005) Asymmetric distribution of cooperativity in the binding cascade of normal human hemoglobin. 2. Stepwise cooperative free energy. Biochemistry 44:11939-49
Kaufman, R M; Lu, Z H; Behl, R et al. (2001) Lack of neighborhood effects from a transcriptionally active phosphoglycerate kinase-neo cassette located between the murine beta-major and beta-minor globin genes. Blood 98:65-73
Doyle, M L; Lew, G; De Young, A et al. (1992) Functional properties of human hemoglobins synthesized from recombinant mutant beta-globins. Biochemistry 31:8629-39
Daugherty, M A; Shea, M A; Johnson, J A et al. (1991) Identification of the intermediate allosteric species in human hemoglobin reveals a molecular code for cooperative switching. Proc Natl Acad Sci U S A 88:1110-4
Ackers, G K (1990) The energetics of ligand-linked subunit assembly in hemoglobin require a third allosteric structure. Biophys Chem 37:371-82
Ackers, G K; Johnson, M L (1990) Analysis of hemoglobin oxygenation from combined equilibrium and kinetic data. Is quaternary enhancement necessary? Biophys Chem 37:265-79
Senear, D F; Ackers, G K (1990) Proton-linked contributions to site-specific interactions of lambda cI repressor and OR. Biochemistry 29:6568-77
Perrella, M; Benazzi, L; Shea, M A et al. (1990) Subunit hybridization studies of partially ligated cyanomethemoglobins using a cryogenic method. Evidence for three allosteric states. Biophys Chem 35:97-103

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