The unifying goal of this proposed research is to investigate the properties of water as a ligand of metals in metalloproteins and to elucidate the role of that water in catalysis by some selected metalloenzymes, especially carbonic anhydrase. I) The hydrogen-deuterium fractionation factor for water as a ligand of metals will be determined by measuring the NMR relaxation enhancement of the protons of water in the presence of complexes and enzymes containing paramagnetic metals. The fractionation factor of water exchanging from the coordination sphere of cobalt in Co(II)-substituted isozymes of carbonic anhydrase and Co(II)-alcohol dehydrogenase will be determined. This information will be used to help interpret observed isotope effects and to arrive at a better understanding of the mechanisms. II) The steady state and 180 exchange kinetics for catalysis by the newly-discovered carbonic anhydrase III from mammalian muscle will be determined. This includes the rate of release from the active site of water bearing substrate oxygen. Of primary importance is to find the pK's of activity-controlling groups since preliminary evidence indicates activity independent of pH from 5 to 8, in strong contrast to the other isozymes. III) A comparison of the kinetics of the three isozymes of mammalian carbonic anhydrase will provide a good opportunity to learn which factors influence the catalysis and the rate of release of water from the active site. The working hypothesis to be tested is that Lys 64 and Arg 67 in the active-site cleft of bovine carbonic anhydrase III cause low activity and low rate of release of water. To test this, chemical modifications will be made of these residues. A cloned gene for mouse, red cell carbonic anhydrase II placed in E. coli will serve as a source of isozyme II for NMR studies of 13C and 15N labeled enzyme. Chemical shifts of these resonances will be measured in the presence of substrate and inhibitors to detect interactions and deduce the role of active-site residues in the catalytic pathway.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM025154-09
Application #
3272794
Study Section
Physical Biochemistry Study Section (PB)
Project Start
1978-04-01
Project End
1987-03-31
Budget Start
1986-04-01
Budget End
1987-03-31
Support Year
9
Fiscal Year
1986
Total Cost
Indirect Cost
Name
University of Florida
Department
Type
Schools of Medicine
DUNS #
073130411
City
Gainesville
State
FL
Country
United States
Zip Code
32611
Kim, Chae Un; Song, HyoJin; Avvaru, Balendu Sankara et al. (2016) Tracking solvent and protein movement during CO2 release in carbonic anhydrase II crystals. Proc Natl Acad Sci U S A 113:5257-62
Zhu, Wen; Easthon, Lindsey M; Reinhardt, Laurie A et al. (2016) Substrate Binding Mode and Molecular Basis of a Specificity Switch in Oxalate Decarboxylase. Biochemistry 55:2163-73
Mahon, Brian P; Bhatt, Avni; Socorro, Lilien et al. (2016) The Structure of Carbonic Anhydrase IX Is Adapted for Low-pH Catalysis. Biochemistry 55:4642-53
Boone, Christopher D; Rasi, Valerio; Tu, Chingkuang et al. (2015) Structural and catalytic effects of proline substitution and surface loop deletion in the extended active site of human carbonic anhydrase II. FEBS J 282:1445-57
Mahon, Brian P; Díaz-Torres, Natalia A; Pinard, Melissa A et al. (2015) Activity and anion inhibition studies of the ?-carbonic anhydrase from Thiomicrospira crunogena XCL-2 Gammaproteobacterium. Bioorg Med Chem Lett 25:4937-40
Arazawa, D T; Kimmel, J D; Finn, M C et al. (2015) Acidic sweep gas with carbonic anhydrase coated hollow fiber membranes synergistically accelerates CO2 removal from blood. Acta Biomater 25:143-9
Pinard, Melissa A; Aggarwal, Mayank; Mahon, Brian P et al. (2015) A sucrose-binding site provides a lead towards an isoform-specific inhibitor of the cancer-associated enzyme carbonic anhydrase IX. Acta Crystallogr F Struct Biol Commun 71:1352-8
Aggarwal, Mayank; McKenna, Robert (2015) Carbonic Anhydrases: Nature's Way to Balance CO2 Concentration. Biochem Mol Biol J 1:
Díaz-Torres, Natalia A; Mahon, Brian P; Boone, Christopher D et al. (2015) Structural and biophysical characterization of the ?-carbonic anhydrase from the gammaproteobacterium Thiomicrospira crunogena XCL-2: insights into engineering thermostable enzymes for CO2 sequestration. Acta Crystallogr D Biol Crystallogr 71:1745-56
Pinard, Melissa A; Mahon, Brian; McKenna, Robert (2015) Probing the surface of human carbonic anhydrase for clues towards the design of isoform specific inhibitors. Biomed Res Int 2015:453543

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