Although the presence of polyadenylate sequences at the 3' -ends of eukaryotic mRNAs has ben known for almost two decades, very little is understood about their physiological function. The more recent discovery that polyadenylate sequences are also present at the termini of bacterial mRNAs provides the opportunity to subject the polyadenylation process to combined biochemical and genetic analysis, which should greatly facilitate the elucidation of its function and the characterization of its components. The proposed research aims to elucidate the mechanism of polyadenylation by identifying the enzymes and nucleic acid sequences that play an essential role in mRNA polyadenylation and by reconstituting these components to yield an in vitro system capable of polyadenylating specific mRNAs. One major focus is to examine the effects of mutations affecting ribonucleases and poly (A) polymerases on the degree and pattern of polyadenylation of a specific mRNA. Another line of investigation will attempt to reconstitute a cell-free polyadenylation system in order to define the protein components required from optimal polyadenylation as well as factors that may modulate the polyadenylation process. A third focus is the analysis of the essential sequence elements at the polyadenylation sites of specific Escherichia coli mRNAs by cloning and sequencing complementary DNAs and by examining the effects of site-directed mutagenesis.
A final aim i s the characterization of the poly (A) polymerases of Escherichia coli, of which there are two major isozymes, and the study of their genes, one of which has already been cloned. It is hop[ed that the proposed application of combined biochemical and molecular genetic approaches to the study of mRNA polyadenylation in E. coli will provide insights into the biological function of this process, which as thus far resisted elucidation in more complex organisms.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM026517-15
Application #
2021812
Study Section
Microbial Physiology and Genetics Subcommittee 2 (MBC)
Project Start
1979-04-01
Project End
1998-08-31
Budget Start
1996-12-01
Budget End
1998-08-31
Support Year
15
Fiscal Year
1997
Total Cost
Indirect Cost
Name
Boston Biomedical Research Institute
Department
Type
DUNS #
058893371
City
Watertown
State
MA
Country
United States
Zip Code
02472
Sarkar, N; Cao, G-J; Jain, C (2002) Identification of multicopy suppressors of the pcnB plasmid copy number defect in Escherichia coli. Mol Genet Genomics 268:62-9
Johnson, M D; Popowski, J; Cao, G J et al. (1998) Bacteriophage T7 mRNA is polyadenylated. Mol Microbiol 27:23-30
Cao, G J; Kalapos, M P; Sarkar, N (1997) Polyadenylated mRNA in Escherichia coli: modulation of poly(A) RNA levels by polynucleotide phosphorylase and ribonuclease II. Biochimie 79:211-20
Kalapos, M P; Paulus, H; Sarkar, N (1997) Identification of ribosomal protein S1 as a poly(A) binding protein in Escherichia coli. Biochimie 79:493-502
Sarkar, N (1997) Polyadenylation of mRNA in prokaryotes. Annu Rev Biochem 66:173-97
Taljanidisz, J; Shen, P; Sarkar, N (1997) Half-life of Escherichia coli polyadenylated lipoprotein mRNA. Biochem Mol Biol Int 42:211-5
Sarkar, B; Cao, G J; Sarkar, N (1997) Identification of two poly(A) polymerases in Bacillus subtilis. Biochem Mol Biol Int 41:1045-50
Cao, G J; Sarkar, N (1997) Stationary phase-specific mRNAs in Escherichia coli are polyadenylated. Biochem Biophys Res Commun 239:46-50
Cao, G J; Pogliano, J; Sarkar, N (1996) Identification of the coding region for a second poly(A) polymerase in Escherichia coli. Proc Natl Acad Sci U S A 93:11580-5
Sarkar, N (1996) Polyadenylation of mRNA in bacteria. Microbiology 142 ( Pt 11):3125-33

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