The goal of this project is the determination of the three-dimensional structures, at atomic resolution, of every kinetically-significant step in the mechanistic pathway of the glycolytic enzyme triose phosphate isomerase. The structures will be determined by the method of X-ray diffraction; those complexes not normally stable at ordinary temperatures will be studied at sub-zero temperatures, where their lifetimes are long enough for data collection. Single crystals of the enzyme from yeast have been grown by precipitation with polyethylene glycol, and a structure solution is in progress at 2A resolution. We plan to add the substrate dihydroxyacetone phosphate to the crystals at minus 10 degrees C and collect a complete set of high resolution diffraction data on the Michaelis complex. The crystal structure of a productive enzyme-substrate complex should add greatly to our knowledge of the origin of the catalytic power of enzymes.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM026788-06
Application #
3274234
Study Section
Biophysics and Biophysical Chemistry B Study Section (BBCB)
Project Start
1979-09-01
Project End
1986-03-31
Budget Start
1985-04-01
Budget End
1986-03-31
Support Year
6
Fiscal Year
1985
Total Cost
Indirect Cost
Name
Massachusetts Institute of Technology
Department
Type
Schools of Arts and Sciences
DUNS #
City
Cambridge
State
MA
Country
United States
Zip Code
Deshpande, Aditi R; Pochapsky, Thomas C; Ringe, Dagmar (2017) The Metal Drives the Chemistry: Dual Functions of Acireductone Dioxygenase. Chem Rev 117:10474-10501
Deshpande, Aditi R; Wagenpfeil, Karina; Pochapsky, Thomas C et al. (2016) Metal-Dependent Function of a Mammalian Acireductone Dioxygenase. Biochemistry 55:1398-407
Huang, Yu-Hwa; Zhu, Chen; Kondo, Yasuyuki et al. (2015) CEACAM1 regulates TIM-3-mediated tolerance and exhaustion. Nature 517:386-90
Liu, Ce Feng; Liu, Dali; Momb, Jessica et al. (2013) A phenylalanine clamp controls substrate specificity in the quorum-quenching metallo-?-lactonase from Bacillus thuringiensis. Biochemistry 52:1603-10
Auclair, Jared R; Somasundaran, Mohan; Green, Karin M et al. (2012) Mass spectrometry tools for analysis of intermolecular interactions. Methods Mol Biol 896:387-98
Somarowthu, Srinivas; Brodkin, Heather R; D'Aquino, J Alejandro et al. (2011) A tale of two isomerases: compact versus extended active sites in ketosteroid isomerase and phosphoglucose isomerase. Biochemistry 50:9283-95
Lazar, Louis M; Fisher, S Zoe; Moulin, Aaron G et al. (2011) Time-of-flight neutron diffraction study of bovine ?-chymotrypsin at the Protein Crystallography Station. Acta Crystallogr Sect F Struct Biol Cryst Commun 67:587-90
Liu, Dali; Momb, Jessica; Thomas, Pei W et al. (2008) Mechanism of the quorum-quenching lactonase (AiiA) from Bacillus thuringiensis. 1. Product-bound structures. Biochemistry 47:7706-14
Momb, Jessica; Wang, Canhui; Liu, Dali et al. (2008) Mechanism of the quorum-quenching lactonase (AiiA) from Bacillus thuringiensis. 2. Substrate modeling and active site mutations. Biochemistry 47:7715-25
Munih, Petra; Moulin, Aaron; Stamper, Carin C et al. (2007) X-ray crystallographic characterization of the Co(II)-substituted Tris-bound form of the aminopeptidase from Aeromonas proteolytica. J Inorg Biochem 101:1099-107

Showing the most recent 10 out of 72 publications