The long term goal of our research is to understand the mechanisms of proton pumping ATPases. Neurospora crassa serves as a model system from which we can isolate three ATPases representative of the three types found in virtually all eucaryotic cells. The mitochondria contain a typical F0F1-ATPase. The plasma membrane contains an H+-ATPase very similar in structure and mechanism to the Na+,K+-ATPase, Ca+2-ATPase, and H+,K+-ATPase of animal cells. The vacuolar membrane contains a newly characterized type of H+-ATPase. On the basis of inhibitor sensitivity and kinetic data, the vacuolar enzyme closely resembles the H+-ATPases of animal cell lysosomes and secretory granules. The major emphasis in our proposed research is to understand the structure and function of the vacuolar ATPase. Our data indicate that the enzyme is a large multisubunit complex. We plan to purify the enzyme further and determine the size and number of copies of each of the subunits. We propose to examine the nature of the """"""""proton channel"""""""" in the vacuolar ATPase. This enzyme contains an Mr = 15,000 subunit which binds dicyclohexylcarbodiimide (DCCD). We wish to identify the DCCD binding residue and determine if the polypeptide is a proteolipid. We also plan to measure the electrochemical gradient generated by the ATPase and to evaluate the nature of its coupling to amino acid uptake in vacuoles. We have isolated polyclonal antibodies to the two major subunits of the vacuolar ATPase. These, and monoclonal antibodies now being selected, will be used in the purification and structural analysis of the ATPase. A second major project with the antibodies is the cloning of the vacuolar ATPase genes, using antibodies to screen a cDNA library constructed in phage lambda gt11. From our initial experiments, we may already have the cDNA for one of the subunits. Much of our past work was devoted to purifying and characterizing the H+-ATPase in the plasma membrane, and we plan to pursue two aspects of that work. First, the hypothesis that the plasma membrane enzyme is a dimer with interacting subunits will be tested by crosslinking the enzyme with reagents that bind specific residues. Since the sequence of this enzyme is known, we can attempt to identify regions of the polypeptide involved in subunit interactions. Second, we have two new strategies to search for mutants with altered plasma membrane ATPase.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM028703-09
Application #
3275978
Study Section
Physical Biochemistry Study Section (PB)
Project Start
1981-02-01
Project End
1992-02-29
Budget Start
1989-03-01
Budget End
1990-02-28
Support Year
9
Fiscal Year
1989
Total Cost
Indirect Cost
Name
University of California Santa Cruz
Department
Type
Schools of Arts and Sciences
DUNS #
City
Santa Cruz
State
CA
Country
United States
Zip Code
95064
Chavez, Christopher; Bowman, Emma Jean; Reidling, Jack C et al. (2006) Analysis of strains with mutations in six genes encoding subunits of the V-ATPase: eukaryotes differ in the composition of the V0 sector of the enzyme. J Biol Chem 281:27052-62
Shen, Ruichao; Lin, Cheng Ting; Bowman, Emma Jean et al. (2003) Lobatamide C: total synthesis, stereochemical assignment, preparation of simplified analogues, and V-ATPase inhibition studies. J Am Chem Soc 125:7889-901
Shen, Ruichao; Lin, Cheng Ting; Bowman, Emma Jean et al. (2002) Synthesis and V-ATPase inhibition of simplified lobatamide analogues. Org Lett 4:3103-6
Bowman, Barry J; Bowman, Emma Jean (2002) Mutations in subunit C of the vacuolar ATPase confer resistance to bafilomycin and identify a conserved antibiotic binding site. J Biol Chem 277:3965-72
Boyd, M R; Farina, C; Belfiore, P et al. (2001) Discovery of a novel antitumor benzolactone enamide class that selectively inhibits mammalian vacuolar-type (H+)-atpases. J Pharmacol Exp Ther 297:114-20
Berg, O G; Gelb, M H; Tsai, M D et al. (2001) Interfacial enzymology: the secreted phospholipase A(2)-paradigm. Chem Rev 101:2613-54
Margolis-Clark, E; Hunt, I; Espinosa, S et al. (2001) Identification of the gene at the pmg locus, encoding system II, the general amino acid transporter in Neurospora crassa. Fungal Genet Biol 33:127-35
Tenney, K; Hunt, I; Sweigard, J et al. (2000) Hex-1, a gene unique to filamentous fungi, encodes the major protein of the Woronin body and functions as a plug for septal pores. Fungal Genet Biol 31:205-17
Bowman, E J; Bowman, B J (2000) Cellular role of the V-ATPase in Neurospora crassa: analysis of mutants resistant to concanamycin or lacking the catalytic subunit A. J Exp Biol 203:97-106
Hunt, I E; Bowman, B J (1997) The intriguing evolution of the ""b"" and ""G"" subunits in F-type and V-type ATPases: isolation of the vma-10 gene from Neurospora crassa. J Bioenerg Biomembr 29:533-40

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