This application proposes to continue the investigation of some of the key enzymes in the shikimate-chorismate pathway. The long term objectives are to elucidate the mechanisms of these enzymes and to develop general strategies for the design of enzyme inhibitors. (1) Dehydroquinase. Substrate analogs capable of aromatization and irreversible covalent linkage to the Type I DHQases are proposed. (2) EPSP Synthase. The intermediate involved in the addition/elimination mechanism of this enzyme, along with its monofluoro analog, will be synthesized to complete a series of tetrahedral analogs. A project in structure-derived inhibitor design, based on the structures of the inhibitor-enzyme complexes, will be initiated. (3) Chorismate Synthase. Some of the remaining mechanistic issues for this enzyme will be resolved by synthesizing and evaluating halo- and cyclopropanated substrate analogs. (4) Chorismate Mutase. New inhibitors of this unique enzyme are proposed, based on the structural information now available on its complex with previous inhibitor; new designs include a ring-expanded analog, potential irreversible inhibitors, and alternative substrates that can differentiate the mechanisms by which the enzymatic and catalytic antibody reactions are accelerated. (5) Shikimate Analogs. A number of analogs of shikimate itself, as well as their 5-enol-pyruvyl-3-phospho-isosteres, will be synthesized and evaluated as alternative substrates for a number of enzymes in the pathway. These analogs include 4-epi-shikimate, 2-halo- shikimates, and 5-membered ring analogs. (6) Isochorismate, Anthranilate, and p-Aminobenzoate Synthases. The project in this area will be concluded through the synthesis of an alternative series of bisubstrate analogs as potential inhibitors of the latter enzyme.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM028965-15
Application #
2391893
Study Section
Bio-Organic and Natural Products Chemistry Study Section (BNP)
Project Start
1983-03-01
Project End
1999-03-31
Budget Start
1997-04-01
Budget End
1998-03-31
Support Year
15
Fiscal Year
1997
Total Cost
Indirect Cost
Name
University of California Berkeley
Department
Chemistry
Type
Schools of Arts and Sciences
DUNS #
094878337
City
Berkeley
State
CA
Country
United States
Zip Code
94704
Hutton, Craig A; Bartlett, Paul A (2007) Preparation of diazabicyclo[4.3.0]nonene-based peptidomimetics. J Org Chem 72:6865-72
Hammond, Ming C; Harris, Baruch Z; Lim, Wendell A et al. (2006) Beta strand peptidomimetics as potent PDZ domain ligands. Chem Biol 13:1247-51
Hediger, Mark E (2004) Design, synthesis, and evaluation of aza inhibitors of chorismate mutase. Bioorg Med Chem 12:4995-5010
An, Ming; Bartlett, Paul A (2004) Enzymatic synthesis of a ring-contracted analogue of 5-enolpyruvylshikimate-3-phosphate. Org Lett 6:4065-7
An, Ming; Maitra, Uday; Neidlein, Ulf et al. (2003) 5-enolpyruvylshikimate 3-phosphate synthase: chemical synthesis of the tetrahedral intermediate and assignment of the stereochemical course of the enzymatic reaction. J Am Chem Soc 125:12759-67
Phillips, Scott T; Rezac, Miroslav; Abel, Ulrich et al. (2002) ""@-Tides"": the 1,2-dihydro-3(6H)-pyridinone unit as a beta-strand mimic. J Am Chem Soc 124:58-66
An, M; Toochinda, T; Bartlett, P A (2001) Five-membered ring analogues of shikimic acid. J Org Chem 66:1326-33
Sefler, A M; Lauri, G; Bartlett, P A (1996) A convenient method for determining cyclic peptide conformation from 1D 1H-NMR information. Int J Pept Protein Res 48:129-38
Lauhon, C T; Bartlett, P A (1994) Substrate analogs as mechanistic probes for the bifunctional chorismate synthase from Neurospora crassa. Biochemistry 33:14100-8