This project is concerned with the control of gene expression and two aspects of this problem are currently being investigataed. Control fo gene expression may be exerted at the levels of initiation of transcription. We have studied the mechanisms of transcriptional control in two bacterial operons, the lac operon and the boitin operon. Currently we are studying the control of the programmed pattern of transcriptional initiation during the infectious cycle of bacteriophage T4. We are also concerned with the control of expression and the function of the actin gene in S. cerevisiae. Most RNA molecules are post-transcriptionally altered in a series of reactions collectively known as RNA processing. It is now clear that RNA processing plays a major role in the expression of eukaryotic genes. The recent elucidation of eukaryotic gene structures has revealed a new principle of organization. Eukaryotic genes are frequently interrupted by non-coding sequences known as intervening sequences or introns. These sequences are removed from RNA precursors in a new processing reaction called RNA splicing. We were the first to demonstrate the RNA splicing reaction in vitro - in this ase with yeast tRNA precursors. We are continuing the study of the tRNA splicing reaction and propose procedures for the investigation of mRNA splicing. Powerful new techniques have recently been developed allowing the in vitro alteration of genes and their return to the organism (transformation). The most powerful of the mutagenic strategies requires the organic synthesis of oligonucleotides by techniques which derive from the pioneering efforts of Khorana. We propose to use these techniques to synthesize oligonucleotides to produce precise alterations of genes in order to study the mechanism of control of RNA synthesis.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM032637-04
Application #
3281679
Study Section
Biochemistry Study Section (BIO)
Project Start
1983-03-01
Project End
1986-11-30
Budget Start
1985-12-01
Budget End
1986-11-30
Support Year
4
Fiscal Year
1986
Total Cost
Indirect Cost
Name
California Institute of Technology
Department
Type
Schools of Arts and Sciences
DUNS #
078731668
City
Pasadena
State
CA
Country
United States
Zip Code
91125
Ryan, Daniel E; Kim, Chang Hee; Murray, James B et al. (2004) New tertiary constraints between the RNA components of active yeast spliceosomes: a photo-crosslinking study. RNA 10:1251-65
Perriman, Rhonda; Barta, Imre; Voeltz, Gia K et al. (2003) ATP requirement for Prp5p function is determined by Cus2p and the structure of U2 small nuclear RNA. Proc Natl Acad Sci U S A 100:13857-62
Ryan, Daniel E; Abelson, John (2002) The conserved central domain of yeast U6 snRNA: importance of U2-U6 helix Ia in spliceosome assembly. RNA 8:997-1010
Ryan, Daniel E; Stevens, Scott W; Abelson, John (2002) The 5' and 3' domains of yeast U6 snRNA: Lsm proteins facilitate binding of Prp24 protein to the U6 telestem region. RNA 8:1011-33
Story, R M; Li, H; Abelson, J N (2001) Crystal structure of a DEAD box protein from the hyperthermophile Methanococcus jannaschii. Proc Natl Acad Sci U S A 98:1465-70
Wagner, J D; Jankowsky, E; Company, M et al. (1998) The DEAH-box protein PRP22 is an ATPase that mediates ATP-dependent mRNA release from the spliceosome and unwinds RNA duplexes. EMBO J 17:2926-37
Arenas, J E; Abelson, J N (1997) Prp43: An RNA helicase-like factor involved in spliceosome disassembly. Proc Natl Acad Sci U S A 94:11798-802
Kim, C H; Ryan, D E; Marciniec, T et al. (1997) Site-specific deoxynucleotide substitutions in yeast U6 snRNA block splicing of pre-mRNA in vitro. EMBO J 16:2119-29
Kim, C H; Abelson, J (1996) Site-specific crosslinks of yeast U6 snRNA to the pre-mRNA near the 5' splice site. RNA 2:995-1010
O'Day, C L; Dalbadie-McFarland, G; Abelson, J (1996) The Saccharomyces cerevisiae Prp5 protein has RNA-dependent ATPase activity with specificity for U2 small nuclear RNA. J Biol Chem 271:33261-7

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