The long range objective of the research supported by this grant is to understand the molecular mechanisms involved in proper chromosome segregation during mitotic and meiotic cell divisions in eukaryotes. An essential component of this process, and the topic of this proposal, is the centromere, a multifaceted chromosomal region that functions to ensure equal distribution of genetic information to the next generation of somatic or germ-line cells. This proposal describes the continuing development of the fission yeast (Schizosaccharomyces pombe) centromere system into a paradigm for the study of complex eukaryotic centromeres. The long term goal is to identify the critical centromeric components, needed both in cis and in trans, and determine how these interact to orchestrate proper centromere function in fission yeast.
The specific aims for the next funding period are: to determine via our minichromosome assay system the minimal DNA sequences and DNA configurations required is cis for various mitotic and meiotic centromere functions; to analyze S. pombe centromeric K repeat/central core interactions and to delimit further and define the specific role of the centromere enhancer contained within the K repeat; to continue the direct isolation of S. pombe centromere/kinetochore proteins via a variety of purification procedures including gel filtration and affinity chromatography and to clone and analyze centromeric protein genes; to identify in S. pombe homologs of known S. cerevisiae centromeric proteins, with the ultimate goal of isolation and characterization of human homologs: and to use genetic screens based on a colony color assay and elevated gene dosage or exploitation of a centromere-targeted epigenetic effect to identify centromere-related protein genes. S. pombe centromeres, which are characterized by centromere-specific repeats, a relatively large size, and a multiplicity of spindle fiber attachments at each kinetochore, resemble those of higher eukaryotes. It is anticipated that our observations with the biochemically and genetically amenable fission yeast system will be relevant to the study of centromere function and chromosome segregation in higher eukaryotes. Aneuploidy, an imbalance of chromosome number that can be brought about the centromere malfunction, is often associated with transformed cells and many cancers. Thus, proper centromere function and chromosome segregation are critical for the maintenance of euploidy in eukaryotic cells.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM033783-14
Application #
2444581
Study Section
Molecular Cytology Study Section (CTY)
Project Start
1984-07-01
Project End
2000-06-30
Budget Start
1997-07-01
Budget End
1998-06-30
Support Year
14
Fiscal Year
1997
Total Cost
Indirect Cost
Name
University of California Santa Barbara
Department
Biochemistry
Type
Schools of Arts and Sciences
DUNS #
City
Santa Barbara
State
CA
Country
United States
Zip Code
93106
Irelan, J T; Gutkin, G I; Clarke, L (2001) Functional redundancies, distinct localizations and interactions among three fission yeast homologs of centromere protein-B. Genetics 157:1191-203
Halverson, D; Gutkin, G; Clarke, L (2000) A novel member of the Swi6p family of fission yeast chromo domain-containing proteins associates with the centromere in vivo and affects chromosome segregation. Mol Gen Genet 264:492-505
Baum, M; Clarke, L (2000) Fission yeast homologs of human CENP-B have redundant functions affecting cell growth and chromosome segregation. Mol Cell Biol 20:2852-64
Zebarjadian, Y; King, T; Fournier, M J et al. (1999) Point mutations in yeast CBF5 can abolish in vivo pseudouridylation of rRNA. Mol Cell Biol 19:7461-72
Halverson, D; Baum, M; Stryker, J et al. (1997) A centromere DNA-binding protein from fission yeast affects chromosome segregation and has homology to human CENP-B. J Cell Biol 136:487-500
Ngan, V K; Clarke, L (1997) The centromere enhancer mediates centromere activation in Schizosaccharomyces pombe. Mol Cell Biol 17:3305-14
Marschall, L G; Clarke, L (1995) A novel cis-acting centromeric DNA element affects S. pombe centromeric chromatin structure at a distance. J Cell Biol 128:445-54
Smith, J G; Caddle, M S; Bulboaca, G H et al. (1995) Replication of centromere II of Schizosaccharomyces pombe. Mol Cell Biol 15:5165-72
Baum, M; Ngan, V K; Clarke, L (1994) The centromeric K-type repeat and the central core are together sufficient to establish a functional Schizosaccharomyces pombe centromere. Mol Biol Cell 5:747-61
Steiner, N C; Clarke, L (1994) A novel epigenetic effect can alter centromere function in fission yeast. Cell 79:865-74

Showing the most recent 10 out of 23 publications