The proposed study represents a continuation of our efforts to determine the molecular basis of segmentation in the Drosophila embryo. The research plan includes three areas of research: transcriptional repression, the regulation of enhancer- promoter interactions, and the localization of posterior determinants. Transcriptional repression is essential for establishing localized stripes and bands of gene expression in the early embryo. Many or most sequence-specific repressors interact with one of two maternal corepressor proteins, Groucho or dCtBP. We will continue our efforts to determine whether these proteins mediate separate pathways of transcriptional repression. Previous studies have identified two mechanisms for regulating enhances-promoter interactions within complex genetic loci: promoter competition and insulator DNAs. There is emerging evidence for a third mechanism, promoter compatibility, whereby a given enhancer can interact with only a subset of all promoter sequences. In the Antennapedia gene complex the linked Scr and ftz genes are differentially regulated by two shared enhancers, AE1 and T1. In the Bithorax complex the shared IAB5 enhancer preferentially activates AbdB but ignores the equidistant abdA gene. We will investigate the possibility that promoter-proximal sequences contain """"""""tethering elements"""""""", which help insure that the right enhancer interacts with the proper target promoter. The localization of Oskar in the posterior plasm of the egg and early embryo depends on the directed movement of microtubules in the growing oocyte. The Oskar RNA is associated with a protein complex that includes Kinesin I, the Par-I kinase, and Staufen. Mutations in these genes cause the arrest of the microtubule/oskar complex in the center of the oocyte. Genetic screens have identified a new mutant, Sinis, that causes the mislocalization of oskar in variable positions within the cortex of the egg. We will determine whether Sinis serves as a target for the directed transport of oskar to the posterior plasm.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM034431-19
Application #
6621771
Study Section
Cell Development and Function Integrated Review Group (CDF)
Program Officer
Greenberg, Judith H
Project Start
1984-12-01
Project End
2005-11-30
Budget Start
2002-12-01
Budget End
2003-11-30
Support Year
19
Fiscal Year
2003
Total Cost
$237,255
Indirect Cost
Name
University of California Berkeley
Department
Biochemistry
Type
Schools of Arts and Sciences
DUNS #
124726725
City
Berkeley
State
CA
Country
United States
Zip Code
94704
Fukaya, Takashi; Lim, Bomyi; Levine, Michael (2017) Rapid Rates of Pol II Elongation in the Drosophila Embryo. Curr Biol 27:1387-1391
Ferraro, Teresa; Esposito, Emilia; Mancini, Laure et al. (2016) Transcriptional Memory in the Drosophila Embryo. Curr Biol 26:212-218
El-Sherif, Ezzat; Levine, Michael (2016) Shadow Enhancers Mediate Dynamic Shifts of Gap Gene Expression in the Drosophila Embryo. Curr Biol 26:1164-9
Fukaya, Takashi; Lim, Bomyi; Levine, Michael (2016) Enhancer Control of Transcriptional Bursting. Cell 166:358-368
Oktaba, Katarzyna; Zhang, Wei; Lotz, Thea Sabrina et al. (2015) ELAV links paused Pol II to alternative polyadenylation in the Drosophila nervous system. Mol Cell 57:341-8
Hilgers, Valérie (2015) Alternative polyadenylation coupled to transcription initiation: Insights from ELAV-mediated 3' UTR extension. RNA Biol 12:918-21
Bothma, Jacques P; Garcia, Hernan G; Ng, Samuel et al. (2015) Enhancer additivity and non-additivity are determined by enhancer strength in the Drosophila embryo. Elife 4:
Bothma, Jacques P; Garcia, Hernan G; Esposito, Emilia et al. (2014) Dynamic regulation of eve stripe 2 expression reveals transcriptional bursts in living Drosophila embryos. Proc Natl Acad Sci U S A 111:10598-603
Levine, Michael; Cattoglio, Claudia; Tjian, Robert (2014) Looping back to leap forward: transcription enters a new era. Cell 157:13-25
Levine, Michael (2014) The contraction of time and space in remote chromosomal interactions. Cell 158:243-244

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