Many of the factors regulating growth and development appear to be conserved between vertebrates and invertebrates. The ease with which certain well studied invertebrates can be manipulated both genetically and experimentally greatly facilitates detailed studies of how these factors operate. Although the genetics and development of C. elegans has been among the most extensively characterized, current molecular studies have been hampered by the lack of DNA transformation techniques for assaying the function of cloned genes in vivo. This project proposes (i) to develop techniques for gene transfer into C. elegans and (ii) to use those techniques to analyze muscle cell development. In the Preliminary Results section, new techniques are presented which allow foreign sequences to be inserted into the C. elegans genome, yielding transgenic lines of animals that express the integrated DNA. These techniques will be used to introduce several cloned muscle specific genes, and to determine which sequences are responsible for tissue specific expression. Once these cis-acting sequences have been identified, the trans-acting factors which interact will be identified by biochemical and/or genetic techniques. The eventual goal is to find the elements responsible for the segregation of developmental potential during the early embryonic division. At the same time, continued improvements in DNA transformation techniques will be sought. These include increases in the frequency of stable transformation, and attempts to utilize transposon vectors or homologous recombination to permit greater control over the structure of the integrated DNA and site of integration. In addition, gene fusions between cloned myosins and a variety of marker polypeptides will be constructed. The identification of a marker system suitable for C. elegans muscle should greatly facilitate the analysis of muscle gene expression described above.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM037706-02
Application #
3293285
Study Section
Genetics Study Section (GEN)
Project Start
1986-12-01
Project End
1989-11-30
Budget Start
1987-12-01
Budget End
1988-11-30
Support Year
2
Fiscal Year
1988
Total Cost
Indirect Cost
Name
Carnegie Institution of Washington, D.C.
Department
Type
DUNS #
072641707
City
Washington
State
DC
Country
United States
Zip Code
20005
Arribere, Joshua A; Fire, Andrew Z (2018) Nonsense mRNA suppression via nonstop decay. Elife 7:
Silas, Sukrit; Jain, Nimit; Stadler, Michael et al. (2018) A Small RNA Isolation and Sequencing Protocol and Its Application to Assay CRISPR RNA Biogenesis in Bacteria. Bio Protoc 8:
Mohr, Georg; Silas, Sukrit; Stamos, Jennifer L et al. (2018) A Reverse Transcriptase-Cas1 Fusion Protein Contains a Cas6 Domain Required for Both CRISPR RNA Biogenesis and RNA Spacer Acquisition. Mol Cell 72:700-714.e8
Shoura, Massa J; Gabdank, Idan; Hansen, Loren et al. (2017) Intricate and Cell Type-Specific Populations of Endogenous Circular DNA (eccDNA) in Caenorhabditis elegans and Homo sapiens. G3 (Bethesda) 7:3295-3303
Silas, Sukrit; Lucas-Elio, Patricia; Jackson, Simon A et al. (2017) Type III CRISPR-Cas systems can provide redundancy to counteract viral escape from type I systems. Elife 6:
Fu, Becky Xu Hua; Wainberg, Michael; Kundaje, Anshul et al. (2017) High-Throughput Characterization of Cascade type I-E CRISPR Guide Efficacy Reveals Unexpected PAM Diversity and Target Sequence Preferences. Genetics 206:1727-1738
Silas, Sukrit; Makarova, Kira S; Shmakov, Sergey et al. (2017) On the Origin of Reverse Transcriptase-Using CRISPR-Cas Systems and Their Hyperdiverse, Enigmatic Spacer Repertoires. MBio 8:
Frøkjær-Jensen, Christian; Jain, Nimit; Hansen, Loren et al. (2016) An Abundant Class of Non-coding DNA Can Prevent Stochastic Gene Silencing in the C. elegans Germline. Cell 166:343-357
Fu, Becky X H; St Onge, Robert P; Fire, Andrew Z et al. (2016) Distinct patterns of Cas9 mismatch tolerance in vitro and in vivo. Nucleic Acids Res 44:5365-77
Arribere, Joshua A; Cenik, Elif S; Jain, Nimit et al. (2016) Translation readthrough mitigation. Nature 534:719-23

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