A wide variety of iron-sulfur clusters and related mixed-metal species are found as active sites in metalloenzymes. In some cases these proteins form part of electron transport chains, and in other cases they serve as catalytic centers for quite unusual chemistry. Our research focusses on the use of modern techniques of quantum chemistry to carry out theoretical studies (at the spin Hamiltonian and density function level) of their electronic structures, in an attempt to more closely connect the spectroscopy of these systems to their structure and function. A new emphasis places increased attention on the spin Hamiltonians used to interpret experimental data, and to ways in which these can be related to detailed computer calculations. The next project period will emphasize the FeS and MoFeS clusters in nitrogenase, the FeS cubane-siroheme system in nitrite and sulfite reductase, and the substrate-bound forms of aconitase. Specific projects include; (a) analysis of ligand hyperfine interactions and paramagnetic NMR shifts in 2Fe and 4Fe cluster; (b) use of our newly- developed model of environmental effects to calculate redox potentials of iron-sulfur clusters in model complexes and in proteins, including the effects of the protein (and amino acid substitution) on redox potential; (c) development of density functional and spin-coupling models for the P the active site of sulfite reductase in its resting and hypothetical intermediate forms; (e) detailed analysis of spin coupling and hyperfine interactions in the active sites of Rieske proteins; (f) further development of computer programs to compute fundamental spectroscopic properties from density functional theory, and to prepare useful graphical representations of charge and spin densities and their associated electrostatic potentials.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM039914-10
Application #
2392053
Study Section
Metallobiochemistry Study Section (BMT)
Project Start
1988-04-01
Project End
1999-03-31
Budget Start
1997-04-01
Budget End
1998-03-31
Support Year
10
Fiscal Year
1997
Total Cost
Indirect Cost
Name
Scripps Research Institute
Department
Type
DUNS #
City
La Jolla
State
CA
Country
United States
Zip Code
92037
Janowski, Pawel A; Liu, Chunmei; Deckman, Jason et al. (2016) Molecular dynamics simulation of triclinic lysozyme in a crystal lattice. Protein Sci 25:87-102
Mitra, Devrani; George, Simon J; Guo, Yisong et al. (2013) Characterization of [4Fe-4S] cluster vibrations and structure in nitrogenase Fe protein at three oxidation levels via combined NRVS, EXAFS, and DFT analyses. J Am Chem Soc 135:2530-43
Sandala, Gregory M; Noodleman, Louis (2011) Modeling the MoFe nitrogenase system with broken symmetry density functional theory. Methods Mol Biol 766:293-312
Mitra, Devrani; Pelmenschikov, Vladimir; Guo, Yisong et al. (2011) Dynamics of the [4Fe-4S] cluster in Pyrococcus furiosus D14C ferredoxin via nuclear resonance vibrational and resonance Raman spectroscopies, force field simulations, and density functional theory calculations. Biochemistry 50:5220-35
Pelmenschikov, Vladimir; Guo, Yisong; Wang, Hongxin et al. (2011) Fe-H/D stretching and bending modes in nuclear resonant vibrational, Raman and infrared spectroscopies: comparisons of density functional theory and experiment. Faraday Discuss 148:409-20; discussion 421-41
Sandala, Gregory M; Hopmann, Kathrin H; Ghosh, Abhik et al. (2011) Calibration of DFT Functionals for the Prediction of Fe Mössbauer Spectral Parameters in Iron-Nitrosyl and Iron-Sulfur Complexes: Accurate Geometries Prove Essential. J Chem Theory Comput 7:3232-3247
Bhave, Devayani P; Han, Wen-Ge; Pazicni, Samuel et al. (2011) Geometric and electrostatic study of the [4Fe-4S] cluster of adenosine-5'-phosphosulfate reductase from broken symmetry density functional calculations and extended X-ray absorption fine structure spectroscopy. Inorg Chem 50:6610-25
Hopmann, Kathrin H; Noodleman, Louis; Ghosh, Abhik (2010) Spin coupling in Roussin's red and black salts. Chemistry 16:10397-408
Hopmann, Kathrin H; Ghosh, Abhik; Noodleman, Louis (2009) Density functional theory calculations on Mössbauer parameters of nonheme iron nitrosyls. Inorg Chem 48:9155-65
Guo, Yisong; Wang, Hongxin; Xiao, Yuming et al. (2008) Characterization of the Fe site in iron-sulfur cluster-free hydrogenase (Hmd) and of a model compound via nuclear resonance vibrational spectroscopy (NRVS). Inorg Chem 47:3969-77

Showing the most recent 10 out of 28 publications