EXCEED THE SPACE PROVIDED. We will continue to study structure-function relationships in a variety of metalloenzymes, using the technique of X-ray absorption spectroscopy. This synchrotron-radiation based technique provides direct local structural information about metal coordination environments at the active sites of metalloenzymes and also probes electronic structure (e.g., oxidation states) of these metal sites. XAS is applicable also to unique non-metal sites (e.g., Se, As, Sb) and we have used this capability to probe Se-substituted substrates and cofactors to .address mechanistic questions in a number of enzymes that utilize sulfur-containing compounds. XAS provides structural information complementary to that of other structural biology techniques, providing very accurate metal-ligand distances on frozen solution samples in a few hours. In this renewal, we will focus on the application of XAS to metal homeostasis systems, investigating both metalloregulation and metal transport and handling proteins. A number of proteins from both the ArsR and MerR families of metalloregulators will be the focus of our work. A second area of thematic effort is selenium in biology. First, we will continue our characterization of naturally occurring selenium-containing enzymes, in particular focusing on purine hydroxylase, a molybdoenzyme that contains a required dissociable selenium cofactor. Second, we will use selenium substitution for sulfur in S-adenosylmethionine (SAM) as a probe for the mechanisms involved in a newly recognized superfamily of SAM-dependent enzymes that function through radical generation. Multiple examples of this superfamily are targeted to allow comparative studies of the mechanisms involved. Third, we will use selenium substitution to investigate the interaction of coenzyme M and coenzyme B with the active-site FeS cluster of the heterodisulfide reductase from methanogenic archaea. In addition to these applications, we will conduct feasibility studies in preparation for a large-scale effort to develop the technology of high-throughput XAS (HT XAS). This technology, designed to characterize the 'metalloproteome', will allow us to interrogate the metal content and metal-site structures within each gene product of a given proteome and ask questions about how the expression of metalloproteins or the post-translational metal-loading of proteins depends on the growth conditions of an organism. This will be a parallel technology to the current developments in structural genomics. PERFORMANCE SITE ========================================Section End===========================================

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM042025-16
Application #
6827819
Study Section
Physical Biochemistry Study Section (PB)
Program Officer
Preusch, Peter C
Project Start
1989-04-01
Project End
2006-11-30
Budget Start
2004-12-01
Budget End
2005-11-30
Support Year
16
Fiscal Year
2005
Total Cost
$257,600
Indirect Cost
Name
University of Georgia
Department
Chemistry
Type
Schools of Arts and Sciences
DUNS #
004315578
City
Athens
State
GA
Country
United States
Zip Code
30602
Tao, Ye; Shokes, Jacob E; McGregor, Wade C et al. (2012) Structural characterization of Zn(II)-, Co(II)-, and Mn(II)-loaded forms of the argE-encoded N-acetyl-L-ornithine deacetylase from Escherichia coli. J Inorg Biochem 111:157-63
Gale, Eric M; Cowart, Darin M; Scott, Robert A et al. (2011) Dipeptide-based models of nickel superoxide dismutase: solvent effects highlight a critical role to Ni-S bonding and active site stabilization. Inorg Chem 50:10460-71
Grossoehme, Nicholas; Kehl-Fie, Thomas E; Ma, Zhen et al. (2011) Control of copper resistance and inorganic sulfur metabolism by paralogous regulators in Staphylococcus aureus. J Biol Chem 286:13522-31
Reyes-Caballero, Hermes; Guerra, Alfredo J; Jacobsen, Faith E et al. (2010) The metalloregulatory zinc site in Streptococcus pneumoniae AdcR, a zinc-activated MarR family repressor. J Mol Biol 403:197-216
Yang, Hua; Lipscomb, Gina L; Keese, Annette M et al. (2010) SurR regulates hydrogen production in Pyrococcus furiosus by a sulfur-dependent redox switch. Mol Microbiol 77:1111-22
Giri, Kalyan; Scott, Robert A; Maynard, Ernest L (2009) Molecular structure and biochemical properties of the HCCH-Zn2+ site in HIV-1 Vif. Biochemistry 48:7969-78
Miao, Ren; Kim, Hansoo; Koppolu, Uma Mahendra Kumar et al. (2009) Biophysical characterization of the iron in mitochondria from Atm1p-depleted Saccharomyces cerevisiae. Biochemistry 48:9556-68
Schofield, Robert M S; Niedbala, Jack C; Nesson, Michael H et al. (2009) Br-rich tips of calcified crab claws are less hard but more fracture resistant: a comparison of mineralized and heavy-element biological materials. J Struct Biol 166:272-87
Ma, Zhen; Cowart, Darin M; Scott, Robert A et al. (2009) Molecular insights into the metal selectivity of the copper(I)-sensing repressor CsoR from Bacillus subtilis. Biochemistry 48:3325-34
Ma, Zhen; Cowart, Darin M; Ward, Brian P et al. (2009) Unnatural amino acid substitution as a probe of the allosteric coupling pathway in a mycobacterial Cu(I) sensor. J Am Chem Soc 131:18044-5

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