The long-term goal of this research is to understand, at the molecular level, the catalytic mechanism and inhibition of beta-lactamases and through this understanding facilitate the development of small-molecule therapeutics. Bacterial resistance to beta-lactam antibiotics has emerged over the past decade as a major health concern. Beta-lactam antibiotics kill bacteria by preventing the complete synthesis of the bacterial cell wall leading to a defective cell wall, which ruptures under the high internal pressure of the cell. Bacteria have developed antibiotic- resistance strategies in three major ways: production of hydrolytic enzymes known as beta-lactamases, changes in the permeability of the cell membrane, and alterations of the target enzymes. Among these mechanisms, beta-lactamase production, relentlessly fueled by natural selection, is generally considered as the primary route of resistance to beta-lactam antibiotics. Significantly, these enzymes can be chromosome or plasmid encoded and are secreted into the periplasmic space of Gram- negative bacteria or into the outer medium by Gram-positive bacteria, which facilitates the spread of beta-lactam resistance. The emerg3ence of anti-beta-lactam activity also has a tremendous social and financial impact because of the continuous need to discover novel antibiotics. The tools that will be used to reach the long-term goal are those of theoretical chemistry, medicinal chemistry and biochemistry. The primary enzymes that will be studied are the beta-lactamases from B. cereus and B. Fragilis. With the aid of these tools the nature and energetics of beta-lactamase-substrate interactions, beta-lactamase- inhibitor interactions and reactions catalyzed by these beta-lactamases will be examined. The insights obtained into these processes will have a major impact on human health by facilitating the design of new drugs that will eliminate at least one bacterial mechanism for anti-beta-lactam activity, which will in turn increase the lifetime of existing antibiotics.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
7R01GM044974-14
Application #
7107762
Study Section
Molecular and Cellular Biophysics Study Section (BBCA)
Program Officer
Wehrle, Janna P
Project Start
1991-04-01
Project End
2007-01-31
Budget Start
2005-08-01
Budget End
2007-01-31
Support Year
14
Fiscal Year
2005
Total Cost
$111,089
Indirect Cost
Name
University of Florida
Department
Chemistry
Type
Schools of Arts and Sciences
DUNS #
969663814
City
Gainesville
State
FL
Country
United States
Zip Code
32611
Li, Pengfei; Merz Jr, Kenneth M (2017) Metal Ion Modeling Using Classical Mechanics. Chem Rev 117:1564-1686
Pan, Li-Li; Song, Lin Frank; Miao, Yipu et al. (2017) Mechanism of Formation of the Nonstandard Product in the Prenyltransferase Reaction of the G115T Mutant of FtmPT1: A Case of Reaction Dynamics Calling the Shots? Biochemistry 56:2995-3007
Burns, Lori A; Faver, John C; Zheng, Zheng et al. (2017) The BioFragment Database (BFDb): An open-data platform for computational chemistry analysis of noncovalent interactions. J Chem Phys 147:161727
Yang, Y; Pan, L; Lightstone, F C et al. (2016) The Role of Molecular Dynamics Potential of Mean Force Calculations in the Investigation of Enzyme Catalysis. Methods Enzymol 577:1-29
Chakravorty, Dhruva K; Li, Pengfei; Tran, Trang T et al. (2016) Metal Ion Capture Mechanism of a Copper Metallochaperone. Biochemistry 55:501-9
Li, Pengfei; Song, Lin Frank; Merz Jr, Kenneth M (2015) Systematic Parameterization of Monovalent Ions Employing the Nonbonded Model. J Chem Theory Comput 11:1645-57
Miao, Yipu; Merz Jr, Kenneth M (2015) Acceleration of High Angular Momentum Electron Repulsion Integrals and Integral Derivatives on Graphics Processing Units. J Chem Theory Comput 11:1449-62
Li, Pengfei; Song, Lin Frank; Merz Jr, Kenneth M (2015) Parameterization of highly charged metal ions using the 12-6-4 LJ-type nonbonded model in explicit water. J Phys Chem B 119:883-95
Ucisik, Melek N; Chakravorty, Dhruva K; Merz Jr, Kenneth M (2015) Models for the Metal Transfer Complex of the N-Terminal Region of CusB and CusF. Biochemistry 54:4226-35
Chakravorty, Dhruva K; Merz Jr, Kenneth M (2014) Studying allosteric regulation in metal sensor proteins using computational methods. Adv Protein Chem Struct Biol 96:181-218

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