Free radical reactivity resulting from the ease of making and breaking one electron bonds leads to essential roles for radicals in biological catalysis, providing easy paths for fundamental processes like C-C bond formation and cleavage, atom transfer and redox chemistry. Biology has evolved specialized structures to take advantage of this unique reactivity, but the instability of most biological radicals makes them difficult to study in detail. The Whittaker's research is focused on studies of an unusually stable free radical in the active site of galactose oxidase, a protein radical directly participating in active site redox chemistry as a free radical-coupled copper complex. Galactose oxidase has provided a unique opportunity to study the involvement of free radicals in enzyme catalysis, serving as a paradigm for radical catalysis in other systems where the catalytic free radical is less accessible. The research plan is based on a multidisciplinary approach combining biochemistry, synthesis, spectroscopy, and computational methods that give insight into the biological control of radical reactivity. Mechanistic studies including isotope kinetics will explore the role of protons in radical catalysis. Biochemical characterization of galactose oxidase and two functional variants, glyoxol oxidase and glycerol oxidase, will provide a framework for comparing the structure and function of the radicals in these proteins. The comparative anatomy of glyoxal oxidase will be developed through crystallographic and mechanistic studies on wild type and mutant protein. Spectroscopic studies (absorption, circular dichroism (CD), magnetic circular dichroism (MCD), Stark, and electron paramagnetic resonance (EPR) will extend structural information on the essential radicals to the electronic level that relates directly to the origins of chemical reactivity. Low temperature MCD experiments on the active site cupric ion and inorganic models will extend insight into the role of the metal in catalysis. These multiple experimental approaches will be complemented by theoretical modeling of the spectra and ab initio calculations of the electronic structure of the catalytic radical complex.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM046749-09
Application #
2900768
Study Section
Metallobiochemistry Study Section (BMT)
Project Start
1992-02-01
Project End
2001-08-31
Budget Start
1999-04-01
Budget End
2001-08-31
Support Year
9
Fiscal Year
1999
Total Cost
Indirect Cost
Name
Oregon Graduate Institute Science & Tech
Department
Biochemistry
Type
Other Domestic Higher Education
DUNS #
City
Beaverton
State
OR
Country
United States
Zip Code
97006
Kempner, Ellis S; Whittaker, James W; Miller, Jay H (2010) Radiation inactivation of galactose oxidase, a monomeric enzyme with a stable free radical. Protein Sci 19:236-41
Lee, Yuk-Ki; Whittaker, Mei M; Whittaker, James W (2008) The electronic structure of the Cys-Tyr(*) free radical in galactose oxidase determined by EPR spectroscopy. Biochemistry 47:6637-49
Tkac, Jan; Whittaker, James W; Ruzgas, Tautgirdas (2007) The use of single walled carbon nanotubes dispersed in a chitosan matrix for preparation of a galactose biosensor. Biosens Bioelectron 22:1820-4
Whittaker, James W (2007) Selective isotopic labeling of recombinant proteins using amino acid auxotroph strains. Methods Mol Biol 389:175-88
Whittaker, Mei M; Whittaker, James W (2006) Streptomyces coelicolor oxidase (SCO2837p): a new free radical metalloenzyme secreted by Streptomyces coelicolor A3(2). Arch Biochem Biophys 452:108-18
Whittaker, Mei M; Whittaker, James W (2005) Construction and characterization of Pichia pastoris strains for labeling aromatic amino acids in recombinant proteins. Protein Expr Purif 41:266-74
Shleev, Sergey; Tkac, Jan; Christenson, Andreas et al. (2005) Direct electron transfer between copper-containing proteins and electrodes. Biosens Bioelectron 20:2517-54
Whittaker, James W (2005) The radical chemistry of galactose oxidase. Arch Biochem Biophys 433:227-39
Minasian, Stefan G; Whittaker, Mei M; Whittaker, James W (2004) Stereoselective hydrogen abstraction by galactose oxidase. Biochemistry 43:13683-93
Whittaker, Mei M; Whittaker, James W (2003) Cu(I)-dependent biogenesis of the galactose oxidase redox cofactor. J Biol Chem 278:22090-101

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