The investigators have designed and synthesized a 21-base long DNA hairpin to serve as a model test antigen to probe the specificity of lupus anti-DNA autoantibodies. The investigators propose that the single-stranded and double-stranded determinants on DNA hairpins can model the ssDNA and dsDNA antigens that are recognized by lupus anti-ssDNA and anti-dsDNA autoantibodies.Unlike many previous anti-DNA test antigens such as synthetic polymers and plasmids, the investigators construct is defined with respect to sequence, size and conformation. A simple chemical method based on disulfide bond crosslinking between modified thymidine bases has been developed to stabilize the conformation of DNA hairpins. The solution- phase geometry of the hairpin test antigen is also being determined by NMR spectroscopy so that binding specificity can be correlated with antigenic structure. This type of comparison has not been possible in many previous studies of anti-DNA specificity because of the size and heterogeneity of the test antigens used (e.g., calf thymus DNA). The investigators synthetic hairpin is recognized by 37 percent (9 of 24) of anti-DNA hybridomas generated from an 8-week old lupus prone MRL-1pr mouse that did not show signs of lupus. More significantly, this hairpin was recognized by all of the anti-DNA monoclonal autoantibodies (4 of 4) produced in a second fusion with a 20-week old MRL-1pr mouse that showed signs of advanced lupus. In binding studies, the investigators propose to measure equilibrium dissociation constants of antibody-hairpin complexes and examine the sequence and conformational specificity of the antibodies. In addition, antibody complexes with a plasmid that contains this hairpin sequence will be studies as a model for anti-DNA autoantibody recognition of """"""""native"""""""" DNA. Antibodies against the investigator's hairpin have also been raised in healthy mice to enable a direct comparison of lupus anti-DNA antibodies. The investigators propose that a comparative study like this will help to uncover the basis for these differences. This research should lead to a better understanding of immune-complex mediated tissue injury and will hopefully identify the molecule(s) that triggers and/or drives the lupus anti-DNA response.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
2R01GM046831-04A2
Application #
2022524
Study Section
Bio-Organic and Natural Products Chemistry Study Section (BNP)
Project Start
1992-08-01
Project End
2000-11-30
Budget Start
1996-12-01
Budget End
1997-11-30
Support Year
4
Fiscal Year
1997
Total Cost
Indirect Cost
Name
University of Michigan Ann Arbor
Department
Chemistry
Type
Schools of Arts and Sciences
DUNS #
791277940
City
Ann Arbor
State
MI
Country
United States
Zip Code
48109
Bobeck, Melissa J; Cleary, Joanne; Beckingham, Jenny A et al. (2007) Effect of somatic mutation on DNA binding properties of anti-DNA autoantibodies. Biopolymers 85:471-80
Bobeck, Melissa J; Glick, Gary D (2007) Role of conformational dynamics in sequence-specific autoantibody*ssDNA recognition. Biopolymers 85:481-9
Cleary, Joanne; Glick, Gary D (2003) Mutational analysis of a sequence-specific ssDNA binding lupus autoantibody. Biochemistry 42:30-41
Beckingham, J A; Glick, G D (2001) Sequence specific recognition of ssDNA by a lupus autoantibody: kinetics and mechanism of binding. Bioorg Med Chem 9:2243-52
Blatt, N B; Glick, G D (2001) Signaling pathways and effector mechanisms pre-programmed cell death. Bioorg Med Chem 9:1371-84
Blatt, N B; Glick, G D (1999) Anti-DNA autoantibodies and systemic lupus erythematosus. Pharmacol Ther 83:125-39
Blatt, N B; Bill, R M; Glick, G D (1998) Characterization of a unique anti-DNA hybridoma. Hybridoma 17:33-9
Bill, R M; Blatt, N B; Glick, G D (1997) Anti-DNA autoantibodies: the other DNA-binding proteins. Bioorg Med Chem 5:467-72
Swanson, P C; Yung, R L; Blatt, N B et al. (1996) Ligand recognition by murine anti-DNA autoantibodies. II. Genetic analysis and pathogenicity. J Clin Invest 97:1748-60
Swanson, P C; Ackroyd, C; Glick, G D (1996) Ligand recognition by anti-DNA autoantibodies. Affinity, specificity, and mode of binding. Biochemistry 35:1624-33

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