This grant will investigate the mechanism(s) that coordinately regulate the class II major histocompatibility complex (MHC) genes. The development of an immune response to a pathogen and the avoidance of an immune response to self proteins require the appropriate expression of class II MHC genes. Understanding how these genes are controlled is therefore necessary for understanding how the immune response is regulated. MHC class II genes are coordinately regulated at the level of transcription either developmentally or through the action of cytokines. At the molecular level, a conserved set of cis-acting elements appear to mediate this coordinate regulation; however, we have presented significant evidence that some of the factors that interact with these cis-elements are not the same for all the genes. For example, in the DRA gene, the X- box region element, which is necessary for B-cell specific expression binds two factors, RFX and X2BP; whereas, the homologous sequence of the DRB gene only binds the X2BP factor. How can these genes be coordinately regulated if their homologous cis-acting sequences fail to bind the same factors? One solution to this problem is that although different factors may interact with some of the elements, the signals that are provided by these factors to the general transcription machinery are similar, thereby regulating the genes coordinately. Alternatively, different class II genes may have additional cis-acting sequences that will overcome a deficiency in one or more shared elements. To determine if these hypotheses are correct, this application will compare the regulatory mechanisms of the alpha and beta chain genes that encode the HLA-DR heterodimer. Experiments are designed to: identity the elements important for DRB gene expression; to clone and characterize a newly discovered factor, X2BP, which interacts with both the DRA and DRB genes and may be involved with coordinate regulation of these genes; and to examine the activation signals that class II-specific DNA-binding proteins provide to the transcriptional machinery in both wild-type and class II transcriptional mutant B cells. Preliminary results from our studies suggest a working model for class II gene regulation that involves a co-activator. In this model, the co- activator is defective in one of the class II mutant cell lines thereby preventing class II expression. These ideas will be tested. Results from these studies may lead to the development of novel immune therapies, which will allow the control of antigen presentation and the immune response via the manipulation of class II gene expression.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM047310-02
Application #
2184729
Study Section
Immunobiology Study Section (IMB)
Project Start
1993-08-01
Project End
1996-07-31
Budget Start
1994-08-01
Budget End
1995-07-31
Support Year
2
Fiscal Year
1994
Total Cost
Indirect Cost
Name
Emory University
Department
Microbiology/Immun/Virology
Type
Schools of Medicine
DUNS #
042250712
City
Atlanta
State
GA
Country
United States
Zip Code
30322
Scharer, Christopher D; Blalock, Emily L; Barwick, Benjamin G et al. (2016) ATAC-seq on biobanked specimens defines a unique chromatin accessibility structure in naïve SLE B cells. Sci Rep 6:27030
Barwick, Benjamin G; Scharer, Christopher D; Bally, Alexander P R et al. (2016) Plasma cell differentiation is coupled to division-dependent DNA hypomethylation and gene regulation. Nat Immunol 17:1216-1225
Kannarkat, G T; Cook, D A; Lee, J-K et al. (2015) Common Genetic Variant Association with Altered HLA Expression, Synergy with Pyrethroid Exposure, and Risk for Parkinson's Disease: An Observational and Case-Control Study. NPJ Parkinsons Dis 1:
Scharer, Christopher D; Choi, Nancy M; Barwick, Benjamin G et al. (2015) Genome-wide CIITA-binding profile identifies sequence preferences that dictate function versus recruitment. Nucleic Acids Res 43:3128-42
Majumder, Parimal; Scharer, Christopher D; Choi, Nancy M et al. (2014) B cell differentiation is associated with reprogramming the CCCTC binding factor-dependent chromatin architecture of the murine MHC class II locus. J Immunol 192:3925-35
Lohsen, S; Majumder, P; Scharer, C D et al. (2014) Common distal elements orchestrate CIITA isoform-specific expression in multiple cell types. Genes Immun 15:543-55
Kasinski, Andrea; Dong, Xueyuan; Khuri, Fadlo R et al. (2014) Transcriptional regulation of YWHAZ, the gene encoding 14-3-3?. PLoS One 9:e93480
Kannarkat, George T; Boss, Jeremy M; Tansey, Malú G (2013) The role of innate and adaptive immunity in Parkinson's disease. J Parkinsons Dis 3:493-514
Choi, Nancy M; Boss, Jeremy M (2012) Multiple histone methyl and acetyltransferase complex components bind the HLA-DRA gene. PLoS One 7:e37554
Zinzow-Kramer, W M; Long, A B; Youngblood, B A et al. (2012) CIITA promoter I CARD-deficient mice express functional MHC class II genes in myeloid and lymphoid compartments. Genes Immun 13:299-310

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