The F1F0-ATP synthase harnesses the energy obtained by oxidation of metabolites to provide energy for most all vital organ and tissue systems. Damage to the genes that code for the F1F0 ATP synthase as a result of aging or via free radicals are associated with neurologic muscle weakness, ataxia, and retinitis pigmentosa. Increased levels of damage have been found in patients with Parkinson's disease and cardiomyopathies. ATP can serve as the energy currency for a cell because the F1F0 ATP synthase maintains the ratio of ATP to ADP/phosphate away from equilibrium. Since the catalytic sites of this enzyme rapidly interconvert ATP with ADP/phosphate such that the equilibrium constant of the bound substrates and products is approximately unity, the mechanism whereby the enzyme selectively releases ATP to maintain the nonequilibrium condition remains a major unanswered question. Our studies with VO+2 to probe the metal binding sites of the F1-ATPase have opened a fertile new avenue of inquiry into the mechanism of this important enzyme. These studies indicated the ligands change during catalysis. These results led us to the view that, by following the sequence in which ligands are inserted and displaced from the catalytic metal center, we can unravel the mechanism that enables the enzyme to release ATP selectively over ADP, even against a concentration gradient. First, specific groups that serve as metal-ligands at the catalytic site will be identified by observing diagnostic changes in the CW-EPR and/or ESEEM spectra of the metal VO+2 bound to the enzyme that has been altered using site-directed mutagenesis. Changes observed by EPR in the mutant enzyme will be anticipated by direct comparison to VO+2-model complexes of known crystallographic structure that contain ligands comparable to either wild type or mutant enzyme. Second, the effects of the differences in the ability of the mutant enzymes to bind the metal-nucleotide complexes will be compared to their catalytic activity. Third, the ability of the mutant enzymes to interconvert between two forms of the catalytic site that contain the metal-nucleotide complex will allow us to determine the importance of each amino acid in the ability to make this switch. By relating the structural information from our EPR studies of the mutants to the crystal structure of the enzyme, we will measure the ability of the enzyme to insert and displace metal ligands, and we will thereby elucidate the relationship between changes in the metal ligation and the enzymatic mechanism.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM050202-02
Application #
2459508
Study Section
Physical Biochemistry Study Section (PB)
Project Start
1996-08-01
Project End
2000-07-31
Budget Start
1997-08-01
Budget End
1998-07-31
Support Year
2
Fiscal Year
1997
Total Cost
Indirect Cost
Name
Arizona State University-Tempe Campus
Department
Other Basic Sciences
Type
Schools of Arts and Sciences
DUNS #
188435911
City
Tempe
State
AZ
Country
United States
Zip Code
85287
Xiong, Fusheng; Frasch, Wayne D (2011) Padlock probe-mediated qRT-PCR for DNA computing answer determination. Nat Comput 10:947-959
Ishmukhametov, Robert; Hornung, Tassilo; Spetzler, David et al. (2010) Direct observation of stepped proteolipid ring rotation in E. coli F?F?-ATP synthase. EMBO J 29:3911-23
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Hornung, Tassilo; Ishmukhametov, Robert; Spetzler, David et al. (2008) Determination of torque generation from the power stroke of Escherichia coli F1-ATPase. Biochim Biophys Acta 1777:579-82
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Spetzler, D; York, J; Dobbin, C et al. (2007) Recent developments of bio-molecular motors as on-chip devices using single molecule techniques. Lab Chip 7:1633-43
Boltz, Kathryn W; Frasch, Wayne D (2006) Hydrogen bonds between the alpha and beta subunits of the F1-ATPase allow communication between the catalytic site and the interface of the beta catch loop and the gamma subunit. Biochemistry 45:11190-9
Spetzler, David; York, Justin; Daniel, Douglas et al. (2006) Microsecond time scale rotation measurements of single F1-ATPase molecules. Biochemistry 45:3117-24
Lowry, David S; Frasch, Wayne D (2005) Interactions between beta D372 and gamma subunit N-terminus residues gamma K9 and gamma S12 are important to catalytic activity catalyzed by Escherichia coli F1F0-ATP synthase. Biochemistry 44:7275-81
Boltz, Kathryn W; Frasch, Wayne D (2005) Interactions of gamma T273 and gamma E275 with the beta subunit PSAV segment that links the gamma subunit to the catalytic site Walker homology B aspartate are important to the function of Escherichia coli F1F0 ATP synthase. Biochemistry 44:9497-506

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