The principal goal of this project is to elucidate the molecular factors that lead to drug resistance in the B-lactamase family of enzymes. (-lactamases are produced by bacteria and they destroy penicillin-type molecules before they can kill their bacterial targets. Thus, B-lactamases themselves are targets for inhibitors. Clinical isolates demonstrate that, B-lactamases develop resistance to their drug-inhibitors by undergoing point mutations. This proposal will elucidate the chemical reactions between a SHV-1 B-lactamase and the clinically important drugs, tazobactam, sulbactam and clavulanic acid; these compounds act as """"""""suicide inhibitors."""""""" The reactions will be characterized by Raman crystallography - by following the reactions in single crystals of the enzyme using a Raman microscope. The drugs are injected separately into the mother liquor containing a crystal of B-lactamase, the inhibitors diffuse fully into the crystal in less than one minute and the subsequent reaction in the active site can be followed via the Raman difference spectrum. Using suitable forms of the enzyme, the structures and populations of the Michaelis complexes, acyl enzymes and final products can be defined in the crystals from the Raman data. By comparing these properties for the wild-type enzyme, and the enzyme that has developed a resistance to the inhibitors, unique insight into the molecular mechanisms underlying resistance will be gained. The resistant forms of the B-lactamase are M691, M69L and M69V, selected for their clinical relevance. The ability of the Raman method to characterize populations of intermediates in single crystals will be used to select optimal times for flash freezing. The crystals containing the trapped reaction intermediates will then be characterized by X-ray crystallography. For the class D B-lactamases OXA-10 and OXA-1, recent studies have indicated that a carbamylated lysine plays a key role in active site chemistry. Raman crystallography will be used to confirm this novel and controversial finding.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
2R01GM054072-09A1
Application #
6870368
Study Section
Physical Biochemistry Study Section (PB)
Program Officer
Ikeda, Richard A
Project Start
1996-04-01
Project End
2008-12-31
Budget Start
2005-01-01
Budget End
2005-12-31
Support Year
9
Fiscal Year
2005
Total Cost
$284,763
Indirect Cost
Name
Case Western Reserve University
Department
Biochemistry
Type
Schools of Medicine
DUNS #
077758407
City
Cleveland
State
OH
Country
United States
Zip Code
44106
Heidari-Torkabadi, Hossein; Bethel, Christopher R; Ding, Zhe et al. (2015) ""Mind the Gap"": Raman Evidence for Rapid Inactivation of CTX-M-9 ?-Lactamase Using Mechanism-Based Inhibitors that Bridge the Active Site. J Am Chem Soc 137:12760-3
Heidari-Torkabadi, Hossein; Che, Tao; Lombardo, Michael N et al. (2015) Measuring propargyl-linked drug populations inside bacterial cells, and their interaction with a dihydrofolate reductase target, by Raman microscopy. Biochemistry 54:2719-26
Antonopoulos, Ioanna H; Warner, Brittany A; Carey, Paul R (2015) Concerted Protein and Nucleic Acid Conformational Changes Observed Prior to Nucleotide Incorporation in a Bacterial RNA Polymerase: Raman Crystallographic Evidence. Biochemistry 54:5297-305
Che, Tao; Rodkey, Elizabeth A; Bethel, Christopher R et al. (2015) Detecting a quasi-stable imine species on the reaction pathway of SHV-1 ?-lactamase and 6?-(hydroxymethyl)penicillanic acid sulfone. Biochemistry 54:734-43
Antonopoulos, Ioanna H; Murayama, Yuko; Warner, Brittany A et al. (2015) Time-resolved Raman and polyacrylamide gel electrophoresis observations of nucleotide incorporation and misincorporation in RNA within a bacterial RNA polymerase crystal. Biochemistry 54:652-65
Heidari Torkabadi, Hossein; Bethel, Christopher R; Papp-Wallace, Krisztina M et al. (2014) Following drug uptake and reactions inside Escherichia coli cells by Raman microspectroscopy. Biochemistry 53:4113-21
Sui, Xuewu; Kiser, Philip D; Che, Tao et al. (2014) Analysis of carotenoid isomerase activity in a prototypical carotenoid cleavage enzyme, apocarotenoid oxygenase (ACO). J Biol Chem 289:12286-99
Che, Tao; Bethel, Christopher R; Pusztai-Carey, Marianne et al. (2014) The different inhibition mechanisms of OXA-1 and OXA-24 ?-lactamases are determined by the stability of active site carboxylated lysine. J Biol Chem 289:6152-64
Rodkey, Elizabeth A; McLeod, David C; Bethel, Christopher R et al. (2013) ?-Lactamase inhibition by 7-alkylidenecephalosporin sulfones: allylic transposition and formation of an unprecedented stabilized acyl-enzyme. J Am Chem Soc 135:18358-69
Espinoza-Herrera, Shirly J; Gaur, Vineet; Suo, Zucai et al. (2013) Following DNA chain extension and protein conformational changes in crystals of a Y-family DNA polymerase via Raman crystallography. Biochemistry 52:4881-90

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