The long term goal of this proposal is to further our understanding of how circadian clocks are built in eukaryotic cells. Circadian clocks are known to regulate many essential cellular processes in all organisms appropriately examined. In higher plants, processes as diverse as photosynthesis and floral induction are subject to circadian regulation. However, the molecular components of these biological clocks remain unknown. We have chosen Arabidopsis as our model system, and we have recently isolated several mutants that exhibit aberrant circadian rhythmicity. Our proposed approach is to use the genetic tools that exist in Arabidopsis to reveal the major components of the Arabidopsis circadian clock. We will extend a mutant screen that has been performed using rhythmic bioluminescence in transgenic seedlings, generated by monitoring the circadian-regulated expression of a CAB::luciferase construct. We will positionally clone the toc1 mutant, which dramatically shortens circadian period of CAB gene expression, CCR gene expression and leaf movements, all of which occur in distinct cell types. TOC1 is therefore likely to encode a central component of the circadian system in Arabidopsis. We will characterize further several other mutant lines, as well as continue our mutant screen using a novel automated procedure. Furthermore, by crossing our CAB::luc marker into many available floral timing mutants, we will be able to relate circadian function to previously defined pathways for photoperiodic control of flowering. Ultimately, we plan to clone the gene(s) that are involved in circadian timing to provide molecular probes for dissecting clock function in higher plants. Given the ubiquity of circadian-regulated physiology, the identification of common clock components will have an impact on understanding the pacemaker mechanism and malfunctions associated with known features of human well-being.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM056006-04
Application #
6019288
Study Section
Molecular Cytology Study Section (CTY)
Project Start
1996-09-01
Project End
2000-08-31
Budget Start
1999-09-01
Budget End
2000-08-31
Support Year
4
Fiscal Year
1999
Total Cost
Indirect Cost
Name
Scripps Research Institute
Department
Type
DUNS #
City
La Jolla
State
CA
Country
United States
Zip Code
92037
Kang, S Earl; Breton, Ghislain; Pruneda-Paz, Jose L (2018) Construction of Arabidopsis Transcription Factor ORFeome Collections and Identification of Protein-DNA Interactions by High-Throughput Yeast One-Hybrid Screens. Methods Mol Biol 1794:151-182
Li, Zheng; Bonaldi, Katia; Uribe, Francisco et al. (2018) A Localized Pseudomonas syringae Infection Triggers Systemic Clock Responses in Arabidopsis. Curr Biol 28:630-639.e4
Lee, Chin-Mei; Feke, Ann; Li, Man-Wah et al. (2018) Decoys Untangle Complicated Redundancy and Reveal Targets of Circadian Clock F-Box Proteins. Plant Physiol 177:1170-1186
Kubota, Akane; Ito, Shogo; Shim, Jae Sung et al. (2017) TCP4-dependent induction of CONSTANS transcription requires GIGANTEA in photoperiodic flowering in Arabidopsis. PLoS Genet 13:e1006856
Tripathi, Prateek; Carvallo, Marcela; Hamilton, Elizabeth E et al. (2017) Arabidopsis B-BOX32 interacts with CONSTANS-LIKE3 to regulate flowering. Proc Natl Acad Sci U S A 114:172-177
Tripathi, Prateek; Pruneda-Paz, José L; Kay, Steve A (2017) A Modified Yeast-one Hybrid System for Heteromeric Protein Complex-DNA Interaction Studies. J Vis Exp :
Shani, Eilon; Salehin, Mohammad; Zhang, Yuqin et al. (2017) Plant Stress Tolerance Requires Auxin-Sensitive Aux/IAA Transcriptional Repressors. Curr Biol 27:437-444
Breton, Ghislain; Kay, Steve A; Pruneda-Paz, José L (2016) Identification of Arabidopsis Transcriptional Regulators by Yeast One-Hybrid Screens Using a Transcription Factor ORFeome. Methods Mol Biol 1398:107-18
Huang, He; Alvarez, Sophie; Bindbeutel, Rebecca et al. (2016) Identification of Evening Complex Associated Proteins in Arabidopsis by Affinity Purification and Mass Spectrometry. Mol Cell Proteomics 15:201-17
Taylor-Teeples, M; Lin, L; de Lucas, M et al. (2015) An Arabidopsis gene regulatory network for secondary cell wall synthesis. Nature 517:571-5

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