The main goal of this proposal is to understand how systems of signaling enzymes work through quantitative studies of Xenopus oocyte maturation. The proposal builds upon recent theoretical studies of the possible kinetic and biochemical properties of signal transduction cascades (linear series of signaling proteins) and loops (signaling systems dominated by feedback) and recent experimental studies of how the Mos/MEK/p42 MAPK and Wee1/Cdc25C/Cdc2 systems do behave in oocytes and oocyte extracts. There are four specific aims: 1. To determine whether hysteresis occurs in the activation of p42 MAPK, and whether it is the biochemical basis for cell fate commitment during oocyte maturation. 2. To determine how switch-like the activation of Cdc2 is during oocyte maturation, and whether any switch-like character is intrinsic to Cdc2 activation or imposed upon it by upstream activators. 3. To determine which components in the MAPK cascade are most sensitive to perturbations, and whether sensitivity trends can be explained and predicted by simple steady-state kinetic considerations. 4. To determine whether regulated nuclear translocation contributes to the ultrasensitive response of p42 MAPK to upstream activators.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM061276-02
Application #
6387156
Study Section
Reproductive Biology Study Section (REB)
Program Officer
Anderson, Richard A
Project Start
2000-04-01
Project End
2004-03-31
Budget Start
2001-04-01
Budget End
2002-03-31
Support Year
2
Fiscal Year
2001
Total Cost
$228,295
Indirect Cost
Name
Stanford University
Department
Biology
Type
Schools of Medicine
DUNS #
800771545
City
Stanford
State
CA
Country
United States
Zip Code
94305
Santos, Silvia D M; Wollman, Roy; Meyer, Tobias et al. (2012) Spatial positive feedback at the onset of mitosis. Cell 149:1500-13
Ferrell Jr, James E (2012) Bistability, bifurcations, and Waddington's epigenetic landscape. Curr Biol 22:R458-66
Ferrell Jr, James E (2011) Simple rules for complex processes: new lessons from the budding yeast cell cycle. Mol Cell 43:497-500
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Ferrell Jr, James E (2009) Q&A: Cooperativity. J Biol 8:53
Ferrell Jr, James E (2009) Q&A: systems biology. J Biol 8:2
Ferrell Jr, James E (2008) Feedback regulation of opposing enzymes generates robust, all-or-none bistable responses. Curr Biol 18:R244-5
Tsai, Tony Yu-Chen; Choi, Yoon Sup; Ma, Wenzhe et al. (2008) Robust, tunable biological oscillations from interlinked positive and negative feedback loops. Science 321:126-9
Hendrickson, David G; Hogan, Daniel J; Herschlag, Daniel et al. (2008) Systematic identification of mRNAs recruited to argonaute 2 by specific microRNAs and corresponding changes in transcript abundance. PLoS One 3:e2126
Santos, Silvia D M; Ferrell, James E (2008) Systems biology: On the cell cycle and its switches. Nature 454:288-9

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