The long term goal of this grant is to understand and model the signal transduction processes that control human cell polarization, migration and chemotaxis. These fundamental cell functions play key roles in development, immune defense and wound healing. A better understanding of these processes will provide valuable information for identifying potential drug targets for immune diseases, cancer, injury and other conditions. We have already developed a dual-positive feedback loop working model for cell polarization and a local coupling model for chemotaxis and our experimental plan is focused on testing whether these models are correct or whether alternative models have to be considered. We will pursue our goals by using a microscopy-based strategy and we will make use of fluorescent biosensors and image analysis of lamellipodia extension, cell migration and chemotaxis using a leukocyte and an endothelial cell model. Our main strategy is to use perturbations that may interfere with cell polarization and chemotaxis and then monitor possible changes in the activity gradients of Rac, CDC42, and Rho as well as in the lipid second messengers PI(45)P2 and PI(345)P3. Our main approach to rapidly activate and inhibit the main proposed intermediate signaling steps is based on a heterodimerization method that we developed to rapidly activate or inhibit Rac, CDC42, Rho, and PI3K as well as of other intermediates in the proposed positive feedback loops. We will also make use of a set of over 2000 interference RNAs that we generated against signaling and actin regulatory proteins and which we already used to identify more than 150 putative signaling proteins that regulate cell migration. We will also be using these siRNAs for perturbing polarization and chemotaxis processes. Our studies on polarization will focus on a working model that a dual positive feedback loop is needed for robust cell polarization. Our chemotaxis studies will focus on the model that mammalian cells primarily sense chemoattractant with their front and steer towards chemoattractant by a stochastic turning process. We are testing the hypothesis that the sensing of chemoattractant is achieved by coupling local receptor stimuli to local extensions of lamellipods and small turns in the direction of migration. We will test the validity of these and other potential models by comparing the experimental data from the perturbation studies with the predictions of model calculations. ? ? ?

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM063702-06
Application #
7187398
Study Section
Cell Structure and Function (CSF)
Program Officer
Shapiro, Bert I
Project Start
2001-07-01
Project End
2010-03-31
Budget Start
2007-04-01
Budget End
2008-03-31
Support Year
6
Fiscal Year
2007
Total Cost
$323,022
Indirect Cost
Name
Stanford University
Department
Biology
Type
Schools of Medicine
DUNS #
009214214
City
Stanford
State
CA
Country
United States
Zip Code
94305
Cappell, Steven D; Mark, Kevin G; Garbett, Damien et al. (2018) EMI1 switches from being a substrate to an inhibitor of APC/CCDH1 to start the cell cycle. Nature 558:313-317
Yang, Hee Won; Chung, Mingyu; Kudo, Takamasa et al. (2017) Competing memories of mitogen and p53 signalling control cell-cycle entry. Nature 549:404-408
Winans, Amy M; Collins, Sean R; Meyer, Tobias (2016) Waves of actin and microtubule polymerization drive microtubule-based transport and neurite growth before single axon formation. Elife 5:e12387
Nguyen, Trang Thi Thu; Park, Wei Sun; Park, Byung Ouk et al. (2016) PLEKHG3 enhances polarized cell migration by activating actin filaments at the cell front. Proc Natl Acad Sci U S A 113:10091-6
Miyazaki, Yusuke; Mizumoto, Kota; Dey, Gautam et al. (2016) A method to rapidly create protein aggregates in living cells. Nat Commun 7:11689
Yang, Hee Won; Collins, Sean R; Meyer, Tobias (2016) Locally excitable Cdc42 signals steer cells during chemotaxis. Nat Cell Biol 18:191-201
Hayer, Arnold; Shao, Lin; Chung, Mingyu et al. (2016) Engulfed cadherin fingers are polarized junctional structures between collectively migrating endothelial cells. Nat Cell Biol 18:1311-1323
Dey, Gautam; Meyer, Tobias (2015) Phylogenetic Profiling for Probing the Modular Architecture of the Human Genome. Cell Syst 1:106-15
Dey, Gautam; Jaimovich, Ariel; Collins, Sean R et al. (2015) Systematic Discovery of Human Gene Function and Principles of Modular Organization through Phylogenetic Profiling. Cell Rep :
Collins, Sean R; Yang, Hee Won; Bonger, Kimberly M et al. (2015) Using light to shape chemical gradients for parallel and automated analysis of chemotaxis. Mol Syst Biol 11:804

Showing the most recent 10 out of 30 publications