The cause of late-onset Alzheimer's disease (LOAD) remains largely unknown despite decades of increasingly intense study. More than 5 million people currently have this disease, it is the 6th leading cause of death in the US, and there are no treatments available that alter its relentless course. The disease is characterized by the accumulation of A peptides in the brain as fibrils, and the collection of fibrils together as histologically observable plaques sounded by dead neurons. We hypothesize that A peptides assume at least several distinct conformations in morphologically indistinguishable fibrils, and that these conformations vary in their thermodynamic stability. It is likely that fibrils approach increasingly stable structures as they mature, so the spectroscopic signals that evolve in the course of maturation should reveal the nature of the interactions that determine stability. Accordingly, our specific aims are to link the conditions of fibril formation to the stability of te fibrils that form and determine the factors that lead to fibrils that are sufficiently stable to pesist in brain tissue. This is a driving biomedical project in the Ultrafast Optical Processes Laboratory at the University of Pennsylvania, an NIH-sponsored Research Resource. Relevance: Our approach has the potential to uncover specific chemical mechanisms that govern amyloid formation in Alzheimer's disease, which would represent a giant step forward in our understanding of its pathogenesis.

Public Health Relevance

We hypothesize that A peptides assume at least several distinct conformations in morphologically indistinguishable fibrils, and that these conformations vary in their thermodynamic stability. It is likely that fibrils approach increasingly stable structures as they mature, so the spectroscopic signals that evolve in the course of maturation should reveal the nature of the interactions that determine stability. Our approach has the potential to compare the various paths to fibril formation and identify the features most likely to be involved in pathogenic states.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
2R01GM076201-08A1
Application #
8913437
Study Section
Special Emphasis Panel (ZRG1)
Program Officer
Smith, Ward
Project Start
2007-04-15
Project End
2019-04-30
Budget Start
2015-05-01
Budget End
2016-04-30
Support Year
8
Fiscal Year
2015
Total Cost
Indirect Cost
Name
University of Pennsylvania
Department
Pharmacology
Type
Schools of Medicine
DUNS #
042250712
City
Philadelphia
State
PA
Country
United States
Zip Code
19104
Furman, Ran; Lee, Jin V; Axelsen, Paul H (2018) Analysis of eicosanoid oxidation products in Alzheimer brain by LC-MS with uniformly 13C-labeled internal standards. Free Radic Biol Med 118:108-118
Grasso, Giuseppe; Axelsen, Paul H (2017) Effects of covalent modification by 4-hydroxy-2-nonenal on the noncovalent oligomerization of ubiquitin. J Mass Spectrom 52:36-42
Lee, Jin V; Furman, Ran; Axelsen, Paul H (2017) Biosynthesis of uniformly labeled13C- and14C-arachidonic acid in Mortierella alpina. Bioresour Technol 227:142-146
Eskici, Gözde; Axelsen, Paul H (2016) The Size of AOT Reverse Micelles. J Phys Chem B 120:11337-11347
Furman, Ran; Murray, Ian V J; Schall, Hayley E et al. (2016) Amyloid Plaque-Associated Oxidative Degradation of Uniformly Radiolabeled Arachidonic Acid. ACS Chem Neurosci 7:367-77
Klinger, Alexandra L; Kiselar, Janna; Ilchenko, Serguei et al. (2014) A synchrotron-based hydroxyl radical footprinting analysis of amyloid fibrils and prefibrillar intermediates with residue-specific resolution. Biochemistry 53:7724-34
Ma, Jianqiang; Komatsu, Hiroaki; Kim, Yung Sam et al. (2013) Intrinsic structural heterogeneity and long-term maturation of amyloid ? peptide fibrils. ACS Chem Neurosci 4:1236-43
Yeung, Priscilla S-W; Eskici, Gözde; Axelsen, Paul H (2013) Infrared spectroscopy of proteins in reverse micelles. Biochim Biophys Acta 1828:2314-8
Yeung, Priscilla S-W; Axelsen, Paul H (2012) The crowded environment of a reverse micelle induces the formation of ?-strand seed structures for nucleating amyloid fibril formation. J Am Chem Soc 134:6061-3
Kim, Yung Sam; Liu, Liu; Axelsen, Paul H et al. (2009) 2D IR provides evidence for mobile water molecules in beta-amyloid fibrils. Proc Natl Acad Sci U S A 106:17751-6

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