Quantum chemistry calculations of spectral parameters would be compared with experimental spectroscopy (NMR, IR and Mossbauer) on the active site structures of heme proteins, with the aim to probe heme-ligand bond angles and heme ruffling, particularly in the paramagnetic states. The long term goals are (1) to understand specificity in small molecule binding to heme proteins, and (2) to validate quantum chemical methods for computing NMR shifts, other spectroscopic quantities and energetics in metallo-proteins. Studies of heme proteins and model systems are proposed, including DFT calculations of paramagnetic shifts and Mossbauer splittings. A variety of NMR measurements will be used to refine the structures of myoglobin, carbonmonoxy-myglobin, cytochrome c from the ferricytochrome c-cytochrome c peroxidase complex. Finally, with the help of the understandng of spectroscopy heme systems, and with Dr. Oldfield's refined structures of the proteins, the energetics of binding of small molecules to hemes will be studied, which he hypothesizes are dominated by hydrogen bonding interactions in the cavity.

Agency
National Institute of Health (NIH)
Institute
National Heart, Lung, and Blood Institute (NHLBI)
Type
Research Project (R01)
Project #
2R01HL019481-22
Application #
6125713
Study Section
Molecular and Cellular Biophysics Study Section (BBCA)
Project Start
1992-04-01
Project End
2004-03-31
Budget Start
2000-06-01
Budget End
2001-03-31
Support Year
22
Fiscal Year
2000
Total Cost
$296,492
Indirect Cost
Name
University of Illinois Urbana-Champaign
Department
Chemistry
Type
Schools of Arts and Sciences
DUNS #
041544081
City
Champaign
State
IL
Country
United States
Zip Code
61820
Oldfield, Eric (2002) Chemical shifts in amino acids, peptides, and proteins: from quantum chemistry to drug design. Annu Rev Phys Chem 53:349-78
Szabo, C M; Sanders, L K; Le, H C et al. (2000) Expression of doubly labeled Saccharomyces cerevisiae iso-1 ferricytochrome c and (1)H, (13)C and (15)N chemical shift assignments by multidimensional NMR. FEBS Lett 482:25-30
Urbina, J A; Moreno, B; Vierkotter, S et al. (1999) Trypanosoma cruzi contains major pyrophosphate stores, and its growth in vitro and in vivo is blocked by pyrophosphate analogs. J Biol Chem 274:33609-15
McMahon, M T; Oldfield, E (1999) Determination of order parameters and correlation times in proteins: a comparison between Bayesian, Monte Carlo and simple graphical methods. J Biomol NMR 13:133-7
Tong, Y; Oldfield, E; Wieckowski, A (1998) Exploring electrochemical interfaces with solid-state NMR. Anal Chem 70:518A-527A
Pearson, J G; Montez, B; Le, H et al. (1997) Assignment and analysis of fluorine nuclear magnetic resonance spectra of 4-fluorotryptophan myoglobins and hemoglobins. Biochemistry 36:3590-9
de Dios, A C; Oldfield, E (1996) Recent progress in understanding chemical shifts. Solid State Nucl Magn Reson 6:101-25
Jameson, A K; Jameson, C J; de Dios, A C et al. (1995) 129Xe magic-angle spinning spectra of xenon in zeolite NaA. Direct observation of mixed clusters of co-adsorbed species. Solid State Nucl Magn Reson 4:1-12
Oldfield, E (1995) Chemical shifts and three-dimensional protein structures. J Biomol NMR 5:217-25
Urbina, J A; Pekerar, S; Le, H B et al. (1995) Molecular order and dynamics of phosphatidylcholine bilayer membranes in the presence of cholesterol, ergosterol and lanosterol: a comparative study using 2H-, 13C- and 31P-NMR spectroscopy. Biochim Biophys Acta 1238:163-76

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