This R25 application seeks a final 5 years to continue development of a research education program (REP) focused on training in the development of computational, and statistical tools or methods to advance human addiction genetic research. By making such tools widely available (after appropriate pretesting and QC) and training a new generation of computational/statistical scientists motivated to pursue problems in addiction genetics research, the program seeks both to maximize the payoff from existing GWAS and genetic epidemiologic studies of substance use (`addiction') disorders, and to facilitate new directions in human addiction genomics research (e.g., emphasizing epigenetic mechanisms, tissue or cell-specific effects). Consistent with the flexibility of the R25 (compared to T/F) mechanisms, the non-traditional backgrounds of postdoctoral trainees (e.g., bioinformatics, computer science, statistical genetics), and the requirement to produce and share innovative tools and methods, the REP proposes a 4-year training model with 3 existing postdocs, and 4 new postdocs to be recruited during the first two years of award. The program recruits postdoctoral trainees globally to identify candidates of exceptional talent and energy, and pairs them with an exceptional, diverse and highly collaborative faculty, reflected in the significant an highly innovative contributions of current and former trainees (e.g., 0.5 million hits per month fo one web-based tool). The program takes advantage of an exceptional institutional environment, Washington University being a leader in genomics research (including epigenomics), in statistical genetics and genomics, and in biological psychiatry research (including psychiatric - and especially addiction - genetics research). It uses a research apprenticeship training model, in which a trainee is paired with a primary mentor with pertinent expertise in computational biology/statistical genomics or genetics research who has identified a problem that can advance human addiction genetics research; one or more co-mentors with strong backgrounds as clinical researchers focused on addiction genetics; and external consultants who can supplement the expertise of the mentoring team (e.g., animal models). Formal coursework at Washington University and workshops attended elsewhere in addiction research, in responsible conduct of research, and other didactics tailored to strengthen academic background (e.g., genomics, computer science) are used to advance the research education of individual postdoctoral trainees. The program is led by directors with backgrounds in addiction genetics, statistical genetics/genomics and computational biology with histories of successful collaboration. The implementation and refinement of the REP is guided by a strong Internal Program Advisory Committee with annual feedback and critique from an outstanding External Advisory Board, and from consultant participants in biennial postdoctoral symposia. We promote ongoing collaboration of addiction, statistical genetics and computational biology scientists in research and in research education beyond the life of the R25.

Public Health Relevance

Illicit drug and tobacco dependence (`addiction') represent a considerable personal, family and public health burden. The important role of individual genetic vulnerability in contributing to addiction risk is well established, but progress in human addictio genetic research in identifying specific genetic mechanisms, and success in translating findings to develop new therapeutic approaches, has been quite modest. This research education program seeks to develop computational and statistical tools, which can be widely used by addiction genetic and other researchers, in order to both maximize existing investments in genomic and genetic epidemiologic studies of addictive disorders, and help advance human addiction genetics/genomics research in new directions.

Agency
National Institute of Health (NIH)
Institute
National Institute on Drug Abuse (NIDA)
Type
Education Projects (R25)
Project #
5R25DA027995-10
Application #
9512903
Study Section
Special Emphasis Panel (ZDA1)
Program Officer
Babecki, Beth
Project Start
2009-09-01
Project End
2020-06-30
Budget Start
2018-07-01
Budget End
2019-06-30
Support Year
10
Fiscal Year
2018
Total Cost
Indirect Cost
Name
Washington University
Department
Psychiatry
Type
Schools of Medicine
DUNS #
068552207
City
Saint Louis
State
MO
Country
United States
Zip Code
63130
Wang, Yanli; Song, Fan; Zhang, Bo et al. (2018) The 3D Genome Browser: a web-based browser for visualizing 3D genome organization and long-range chromatin interactions. Genome Biol 19:151
Ding, Li; Bailey, Matthew H; Porta-Pardo, Eduard et al. (2018) Perspective on Oncogenic Processes at the End of the Beginning of Cancer Genomics. Cell 173:305-320.e10
Cruchaga, Carlos; Del-Aguila, Jorge L; Saef, Benjamin et al. (2018) Polygenic risk score of sporadic late-onset Alzheimer's disease reveals a shared architecture with the familial and early-onset forms. Alzheimers Dement 14:205-214
Sundaram, Vasavi; Wang, Ting (2018) Transposable Element Mediated Innovation in Gene Regulatory Landscapes of Cells: Re-Visiting the ""Gene-Battery"" Model. Bioessays 40:
Brophy, R H; Zhang, B; Cai, L et al. (2018) Transcriptome comparison of meniscus from patients with and without osteoarthritis. Osteoarthritis Cartilage 26:422-432
Cheng, Cheng; Deng, Pan-Yue; Ikeuchi, Yoshiho et al. (2018) Characterization of a Mouse Model of Börjeson-Forssman-Lehmann Syndrome. Cell Rep 25:1404-1414.e6
Zhang, Chengkang; Lee, Hyung Joo; Shrivastava, Anura et al. (2018) Long-Term In Vitro Expansion of Epithelial Stem Cells Enabled by Pharmacological Inhibition of PAK1-ROCK-Myosin II and TGF-? Signaling. Cell Rep 25:598-610.e5
Jiang, Kaiyu; Wong, Laiping; Chen, Yanmin et al. (2018) Soluble inflammatory mediators induce transcriptional re-organization that is independent of dna methylation changes in cultured human chorionic villous trophoblasts. J Reprod Immunol 128:2-8
Xing, Xiaoyun; Zhang, Bo; Li, Daofeng et al. (2018) Comprehensive Whole DNA Methylome Analysis by Integrating MeDIP-seq and MRE-seq. Methods Mol Biol 1708:209-246
Agrawal, A; Chou, Y-L; Carey, C E et al. (2018) Genome-wide association study identifies a novel locus for cannabis dependence. Mol Psychiatry 23:1293-1302

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