We request a ThermoFisher LTQ XL linear ion trap with an electron transfer dissociation source to be placed in the Oregon Health &Science University's Proteomics Shared Resource (PSR). Due to the high sensitivity and fast scan rates, this instrument will be used to identify proteins in complex mixtures of precipitated proteins in Protein/Protein or Protein/Drug interaction studies, preparations of subcellular fractions, extracts of microdissected tissues, and immuno-depleted serum samples. The electron transfer dissociation source will be used to improve the detection and localization of post-translational modifications, including phosphorylation, glycosylation and isomerization of aspartate. The instrument will play a crucial role in 12 diverse projects studying the causes of human disease including cataracts, hearing loss, neurodegenerative disease in the young and old, cancer, methamphetamine addiction, hemochromatosis, and diabetes. The introduction of this instrument will fulfill the growing needs of the researchers at the Oregon Health &Sciences University to incorporate state-of-the-art tools in proteomics into their research. This will speed their progress of discovery to improve the detection and treatment of human disease.

Public Health Relevance

We request funding for an LTQ XL ion trap mass spectrometer to identify proteins and detect their modifications. This instrument will be placed in a shared core facility and will help investigate the cause and treatment of diseases ranging from cancer to hearing loss at the Oregon Health &Science University.

Agency
National Institute of Health (NIH)
Institute
National Center for Research Resources (NCRR)
Type
Biomedical Research Support Shared Instrumentation Grants (S10)
Project #
1S10RR025571-01
Application #
7595676
Study Section
Special Emphasis Panel (ZRG1-BCMB-S (30))
Program Officer
Tingle, Marjorie
Project Start
2009-02-04
Project End
2010-02-03
Budget Start
2009-02-04
Budget End
2010-02-03
Support Year
1
Fiscal Year
2009
Total Cost
$388,688
Indirect Cost
Name
Oregon Health and Science University
Department
Biochemistry
Type
Schools of Medicine
DUNS #
096997515
City
Portland
State
OR
Country
United States
Zip Code
97239
Li, Bingbing X; Chen, Jingjin; Chao, Bo et al. (2018) Anticancer Pyrroloquinazoline LBL1 Targets Nuclear Lamins. ACS Chem Biol 13:1380-1387
Rozanov, Dmitri V; Rozanov, Nikita D; Chiotti, Kami E et al. (2018) MHC class I loaded ligands from breast cancer cell lines: A potential HLA-I-typed antigen collection. J Proteomics 176:13-23
Danelishvili, Lia; Chinison, Jessica J J; Pham, Tuan et al. (2017) The Voltage-Dependent Anion Channels (VDAC) of Mycobacterium avium phagosome are associated with bacterial survival and lipid export in macrophages. Sci Rep 7:7007
Rauch, Benjamin J; Klimek, John; David, Larry et al. (2017) Persulfide Formation Mediates Cysteine and Homocysteine Biosynthesis in Methanosarcina acetivorans. Biochemistry 56:1051-1061
Danelishvili, Lia; Everman, Jamie; Bermudez, Luiz E (2016) Mycobacterium tuberculosis PPE68 and Rv2626c genes contribute to the host cell necrosis and bacterial escape from macrophages. Virulence 7:23-32
Cugusi, Simona; Kallappagoudar, Satish; Ling, Huiping et al. (2015) The Drosophila Helicase Maleless (MLE) is Implicated in Functions Distinct From its Role in Dosage Compensation. Mol Cell Proteomics 14:1478-88
Kim, Soo Jung; Yoon, Jae Seok; Shishido, Hideki et al. (2015) Protein folding. Translational tuning optimizes nascent protein folding in cells. Science 348:444-8
Avenarius, Matthew R; Saylor, Katherine W; Lundeberg, Megan R et al. (2014) Correlation of actin crosslinker and capper expression levels with stereocilia growth phases. Mol Cell Proteomics 13:606-20
Carter-O'Connell, Ian; Jin, Haihong; Morgan, Rory K et al. (2014) Engineering the substrate specificity of ADP-ribosyltransferases for identifying direct protein targets. J Am Chem Soc 136:5201-4
Tran, Khoa D; Rodriguez-Contreras, Dayana; Vieira, Danielle P et al. (2013) KHARON1 mediates flagellar targeting of a glucose transporter in Leishmania mexicana and is critical for viability of infectious intracellular amastigotes. J Biol Chem 288:22721-33

Showing the most recent 10 out of 12 publications