The proposed instrument will be the central analytical tool for the glycomics profiling in several NIH projects focused on infection and disease diagnosis. The instrument includes an integrated nanoflow liquid chromatography device with a quadrupole time-of-flight (Q-TOF) mass analyzer. The instrument is similar to an existing instrument that is on loan in the Principal Investigator's laboratory. The new instrument will include tandem MS capability for online structural analysis. The proposed instrument will be used to analyze oligosaccharides and determine their structures in highly complicated biological mixtures. Projects that the instrument will be used for include: (1) The determination of O-glycans in stomach mucin to determine the site of interaction with Helicobacter pylori;Serum glycan biomarkers for early detection of H. pylori-associated gastric cancer (Dr. Jay Solnick, School of Medicine), (2) The effect of prebiotics and probiotics in necrotizing enterocolitis (Dr. Mark Underwood, School of Medicine), (3) The profiling of oligosaccharides by nanoLC Chip/Q-TOF mass spectrometry (Dr. Carlito Lebrilla, Department of Chemistry and School of Medicine), (4) Mass spectrometry identification of molecular complexes in cell lysates and """"""""hit compounds"""""""" (Dr. Xiangdong Zhu, Department of Physics), (5) The search of glycans markers for disease (Dr. Kit Lam, School of Medicine), (6) The analysis of products and intermediates in multiple-enzyme reactions (Dr. Xi Chen, Department of Chemistry), and (7) The design and synthesis of chemotherapeutics (Dr. Jacqueline Gervay-Hague, Department of Chemistry).

Public Health Relevance

A nanoflow liquid chromatography time-of-flight mass spectrometry instrument with an integrated microchip separation device is requested for performing glycomics profiling of biological fluids. The instrument will be used for research related to human health in terms of gut health, cancer diagnosis, and infection.

Agency
National Institute of Health (NIH)
Institute
National Center for Research Resources (NCRR)
Type
Biomedical Research Support Shared Instrumentation Grants (S10)
Project #
1S10RR027639-01
Application #
7794794
Study Section
Special Emphasis Panel (ZRG1-BCMB-R (30))
Program Officer
Birken, Steven
Project Start
2010-09-01
Project End
2011-08-31
Budget Start
2010-09-01
Budget End
2011-08-31
Support Year
1
Fiscal Year
2010
Total Cost
$499,991
Indirect Cost
Name
University of California Davis
Department
Chemistry
Type
Schools of Arts and Sciences
DUNS #
047120084
City
Davis
State
CA
Country
United States
Zip Code
95618
Kailemia, Muchena J; Xu, Gege; Wong, Maurice et al. (2018) Recent Advances in the Mass Spectrometry Methods for Glycomics and Cancer. Anal Chem 90:208-224
Huang, Jincui; Kailemia, Muchena J; Goonatilleke, Elisha et al. (2017) Quantitation of human milk proteins and their glycoforms using multiple reaction monitoring (MRM). Anal Bioanal Chem 409:589-606
De Leoz, Maria Lorna A; Kalanetra, Karen M; Bokulich, Nicholas A et al. (2015) Human milk glycomics and gut microbial genomics in infant feces show a correlation between human milk oligosaccharides and gut microbiota: a proof-of-concept study. J Proteome Res 14:491-502
Huang, Jincui; Guerrero, Andres; Parker, Evan et al. (2015) Site-specific glycosylation of secretory immunoglobulin A from human colostrum. J Proteome Res 14:1335-49
Huebener, Sina; Tanaka, Charlene K; Uhde, Melanie et al. (2015) Specific nongluten proteins of wheat are novel target antigens in celiac disease humoral response. J Proteome Res 14:503-11
Hua, Serenus; Saunders, Mary; Dimapasoc, Lauren M et al. (2014) Differentiation of cancer cell origin and molecular subtype by plasma membrane N-glycan profiling. J Proteome Res 13:961-8
Huang, Jincui; Lee, Hyeyoung; Zivkovic, Angela M et al. (2014) Glycomic analysis of high density lipoprotein shows a highly sialylated particle. J Proteome Res 13:681-91
Guerrero, Andres; Lebrilla, Carlito B (2013) New strategies for resolving oligosaccharide isomers by exploiting mechanistic and thermochemical aspects of fragment ion formation. Int J Mass Spectrom 354-355:
Smilowitz, Jennifer T; Zivkovic, Angela M; Wan, Yu-Jui Yvonne et al. (2013) Nutritional lipidomics: molecular metabolism, analytics, and diagnostics. Mol Nutr Food Res 57:1319-35
Dallas, David C; Guerrero, Andres; Khaldi, Nora et al. (2013) Extensive in vivo human milk peptidomics reveals specific proteolysis yielding protective antimicrobial peptides. J Proteome Res 12:2295-304

Showing the most recent 10 out of 27 publications